Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2972

Experiment: BHIS with Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT2971 and BT2972 are separated by 425 nucleotidesBT2972 and BT2973 are separated by 74 nucleotidesBT2973 and BT2974 are separated by 14 nucleotidesBT2974 and BT2975 overlap by 17 nucleotides BT2971: BT2971 - two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file), at 3,747,864 to 3,751,904 BT2971 BT2972: BT2972 - conserved hypothetical protein (NCBI ptt file), at 3,752,330 to 3,753,103 BT2972 BT2973: BT2973 - transcriptional regulator (NCBI ptt file), at 3,753,178 to 3,753,528 BT2973 BT2974: BT2974 - hypothetical protein (NCBI ptt file), at 3,753,543 to 3,753,761 BT2974 BT2975: BT2975 - putative nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (NCBI ptt file), at 3,753,745 to 3,754,449 BT2975 Position (kb) 3752 3753 3754Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3751.395 kb on + strand, within BT2971at 3751.395 kb on + strand, within BT2971at 3751.396 kb on - strand, within BT2971at 3751.396 kb on - strand, within BT2971at 3751.396 kb on - strand, within BT2971at 3751.414 kb on + strand, within BT2971at 3751.414 kb on + strand, within BT2971at 3751.414 kb on + strand, within BT2971at 3751.414 kb on + strand, within BT2971at 3751.415 kb on - strand, within BT2971at 3751.415 kb on - strand, within BT2971at 3751.470 kb on - strand, within BT2971at 3751.487 kb on - strand, within BT2971at 3751.489 kb on + strand, within BT2971at 3751.489 kb on + strand, within BT2971at 3751.520 kb on + strandat 3751.521 kb on - strandat 3751.543 kb on + strandat 3751.587 kb on - strandat 3751.622 kb on - strandat 3751.637 kb on + strandat 3751.647 kb on + strandat 3751.664 kb on + strandat 3751.665 kb on - strandat 3751.667 kb on + strandat 3751.667 kb on + strandat 3751.667 kb on + strandat 3751.707 kb on + strandat 3751.707 kb on + strandat 3751.728 kb on - strandat 3751.728 kb on - strandat 3751.728 kb on - strandat 3751.742 kb on + strandat 3751.742 kb on + strandat 3751.777 kb on + strandat 3751.816 kb on - strandat 3751.842 kb on - strandat 3751.866 kb on + strandat 3751.867 kb on - strandat 3751.913 kb on + strandat 3751.913 kb on + strandat 3751.917 kb on + strandat 3751.980 kb on + strandat 3752.112 kb on + strandat 3752.113 kb on - strandat 3752.133 kb on + strandat 3752.159 kb on - strandat 3752.263 kb on + strandat 3752.279 kb on + strandat 3752.280 kb on - strandat 3752.291 kb on + strandat 3752.322 kb on + strandat 3752.344 kb on + strandat 3752.344 kb on + strandat 3752.344 kb on + strandat 3752.350 kb on + strandat 3752.351 kb on - strandat 3752.351 kb on - strandat 3752.380 kb on + strandat 3752.381 kb on - strandat 3752.384 kb on + strandat 3752.554 kb on - strand, within BT2972at 3752.573 kb on - strand, within BT2972at 3752.708 kb on - strand, within BT2972at 3752.710 kb on - strand, within BT2972at 3752.837 kb on + strand, within BT2972at 3752.866 kb on + strand, within BT2972at 3752.867 kb on - strand, within BT2972at 3752.867 kb on - strand, within BT2972at 3752.894 kb on - strand, within BT2972at 3752.964 kb on + strand, within BT2972at 3752.965 kb on - strand, within BT2972at 3753.032 kb on + strandat 3753.032 kb on + strandat 3753.047 kb on + strandat 3753.048 kb on - strandat 3753.052 kb on + strandat 3753.065 kb on + strandat 3753.066 kb on - strandat 3753.075 kb on - strandat 3753.075 kb on - strandat 3753.079 kb on - strandat 3753.083 kb on + strandat 3753.084 kb on - strandat 3753.084 kb on - strandat 3753.087 kb on + strandat 3753.088 kb on - strandat 3753.109 kb on - strandat 3753.154 kb on + strandat 3753.157 kb on + strandat 3753.211 kb on - strandat 3753.254 kb on + strand, within BT2973at 3753.255 kb on - strand, within BT2973at 3753.358 kb on + strand, within BT2973at 3753.358 kb on + strand, within BT2973at 3753.481 kb on - strand, within BT2973at 3753.526 kb on + strandat 3753.673 kb on + strand, within BT2974at 3753.674 kb on - strand, within BT2974at 3753.677 kb on - strand, within BT2974at 3753.695 kb on + strand, within BT2974at 3753.731 kb on + strand, within BT2974at 3753.738 kb on - strand, within BT2974at 3753.759 kb on + strandat 3753.828 kb on + strand, within BT2975at 3753.828 kb on + strand, within BT2975at 3753.829 kb on - strand, within BT2975at 3753.829 kb on - strand, within BT2975at 3753.829 kb on - strand, within BT2975at 3753.829 kb on - strand, within BT2975at 3753.834 kb on + strand, within BT2975at 3753.835 kb on - strand, within BT2975at 3753.853 kb on + strand, within BT2975at 3753.861 kb on - strand, within BT2975at 3753.885 kb on - strand, within BT2975at 3753.910 kb on + strand, within BT2975at 3753.911 kb on - strand, within BT2975at 3753.911 kb on - strand, within BT2975at 3753.911 kb on - strand, within BT2975at 3753.940 kb on + strand, within BT2975at 3753.940 kb on + strand, within BT2975at 3753.955 kb on + strand, within BT2975at 3754.008 kb on + strand, within BT2975at 3754.042 kb on - strand, within BT2975at 3754.061 kb on + strand, within BT2975at 3754.062 kb on - strand, within BT2975at 3754.062 kb on - strand, within BT2975at 3754.084 kb on + strand, within BT2975at 3754.085 kb on - strand, within BT2975at 3754.086 kb on + strand, within BT2975at 3754.087 kb on - strand, within BT2975at 3754.088 kb on + strand, within BT2975at 3754.089 kb on - strand, within BT2975at 3754.089 kb on - strand, within BT2975

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Paraquat dichloride 0.1 mg/ml
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3,751,395 + BT2971 0.87 -0.4
3,751,395 + BT2971 0.87 -2.0
3,751,396 - BT2971 0.87 +2.0
3,751,396 - BT2971 0.87 -0.5
3,751,396 - BT2971 0.87 +0.2
3,751,414 + BT2971 0.88 -1.1
3,751,414 + BT2971 0.88 -0.7
3,751,414 + BT2971 0.88 +0.1
3,751,414 + BT2971 0.88 -0.7
3,751,415 - BT2971 0.88 +0.8
3,751,415 - BT2971 0.88 +2.1
3,751,470 - BT2971 0.89 +1.5
3,751,487 - BT2971 0.90 -0.3
3,751,489 + BT2971 0.90 +1.1
3,751,489 + BT2971 0.90 +0.3
3,751,520 + -2.5
3,751,521 - -1.8
3,751,543 + -0.8
3,751,587 - +0.1
3,751,622 - -0.1
3,751,637 + -0.1
3,751,647 + +0.1
3,751,664 + -0.6
3,751,665 - -0.7
3,751,667 + +0.2
3,751,667 + -1.5
3,751,667 + +0.3
3,751,707 + -4.4
3,751,707 + -2.4
3,751,728 - +1.3
3,751,728 - -0.7
3,751,728 - -0.0
3,751,742 + -1.1
3,751,742 + +0.6
3,751,777 + +0.8
3,751,816 - -1.4
3,751,842 - -1.1
3,751,866 + -2.0
3,751,867 - +1.2
3,751,913 + -0.6
3,751,913 + -1.5
3,751,917 + -3.6
3,751,980 + +0.6
3,752,112 + -2.0
3,752,113 - -3.0
3,752,133 + -0.8
3,752,159 - -0.6
3,752,263 + +1.3
3,752,279 + -2.3
3,752,280 - +1.3
3,752,291 + +3.6
3,752,322 + -1.3
3,752,344 + +0.2
3,752,344 + -0.4
3,752,344 + -1.5
3,752,350 + -0.9
3,752,351 - +0.3
3,752,351 - +1.7
3,752,380 + -0.1
3,752,381 - -0.2
3,752,384 + +1.0
3,752,554 - BT2972 0.29 -3.2
3,752,573 - BT2972 0.31 +1.6
3,752,708 - BT2972 0.49 -1.7
3,752,710 - BT2972 0.49 -1.2
3,752,837 + BT2972 0.66 -1.4
3,752,866 + BT2972 0.69 -2.0
3,752,867 - BT2972 0.69 -1.7
3,752,867 - BT2972 0.69 -2.4
3,752,894 - BT2972 0.73 -2.6
3,752,964 + BT2972 0.82 +1.3
3,752,965 - BT2972 0.82 -3.8
3,753,032 + -1.5
3,753,032 + +1.3
3,753,047 + -2.0
3,753,048 - -0.1
3,753,052 + +0.3
3,753,065 + -0.2
3,753,066 - -1.3
3,753,075 - +0.2
3,753,075 - -1.5
3,753,079 - +1.0
3,753,083 + -1.2
3,753,084 - -0.4
3,753,084 - +1.0
3,753,087 + -2.2
3,753,088 - -0.9
3,753,109 - -1.3
3,753,154 + +1.3
3,753,157 + -1.9
3,753,211 - -1.8
3,753,254 + BT2973 0.22 -0.3
3,753,255 - BT2973 0.22 +0.2
3,753,358 + BT2973 0.51 -0.0
3,753,358 + BT2973 0.51 -2.0
3,753,481 - BT2973 0.86 +1.3
3,753,526 + +1.3
3,753,673 + BT2974 0.59 +1.5
3,753,674 - BT2974 0.60 +0.3
3,753,677 - BT2974 0.61 +1.1
3,753,695 + BT2974 0.69 -2.5
3,753,731 + BT2974 0.86 -1.5
3,753,738 - BT2974 0.89 -0.8
3,753,759 + -2.5
3,753,828 + BT2975 0.12 +1.3
3,753,828 + BT2975 0.12 +1.3
3,753,829 - BT2975 0.12 -1.6
3,753,829 - BT2975 0.12 -1.3
3,753,829 - BT2975 0.12 -0.3
3,753,829 - BT2975 0.12 -1.5
3,753,834 + BT2975 0.13 -2.0
3,753,835 - BT2975 0.13 -2.6
3,753,853 + BT2975 0.15 -2.2
3,753,861 - BT2975 0.16 -0.1
3,753,885 - BT2975 0.20 -1.6
3,753,910 + BT2975 0.23 -1.0
3,753,911 - BT2975 0.24 -1.0
3,753,911 - BT2975 0.24 +1.3
3,753,911 - BT2975 0.24 +0.7
3,753,940 + BT2975 0.28 +0.1
3,753,940 + BT2975 0.28 -3.4
3,753,955 + BT2975 0.30 -1.7
3,754,008 + BT2975 0.37 -0.4
3,754,042 - BT2975 0.42 -0.6
3,754,061 + BT2975 0.45 +0.3
3,754,062 - BT2975 0.45 -0.9
3,754,062 - BT2975 0.45 -1.3
3,754,084 + BT2975 0.48 -2.6
3,754,085 - BT2975 0.48 +1.3
3,754,086 + BT2975 0.48 -0.7
3,754,087 - BT2975 0.49 +1.3
3,754,088 + BT2975 0.49 -0.3
3,754,089 - BT2975 0.49 +0.4
3,754,089 - BT2975 0.49 +1.2

Or see this region's nucleotide sequence