Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2019

Experiment: BHIS with Paraquat dichloride 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Paraquat dichloride 0.1 mg/ml
2,532,427	+		BT2018	0.31	+3.0
2,532,427	+		BT2018	0.31	+0.3
2,532,428	-		BT2018	0.31	+1.1
2,532,428	-		BT2018	0.31	+1.2
2,532,428	-		BT2018	0.31	+0.5
2,532,497	+		BT2018	0.45	-2.4
2,532,520	-		BT2018	0.50	-1.2
2,532,583	+		BT2018	0.63	+1.1
2,532,599	-		BT2018	0.66	+0.5
2,532,666	+		BT2018	0.80	-0.9
2,532,713	+		BT2018	0.89	-2.5
2,532,729	-				-0.0
2,532,796	+				-1.2
2,532,796	+				+0.6
2,532,798	+				-2.8
2,532,814	-				-2.4
2,532,944	+				-0.4
2,533,157	+		BT2019	0.16	+0.4
2,533,352	+		BT2019	0.26	-1.7
2,533,424	+		BT2019	0.29	-2.2
2,533,761	+		BT2019	0.45	-2.2
2,533,830	-		BT2019	0.49	-3.5
2,534,019	+		BT2019	0.58	-2.0
2,534,020	-		BT2019	0.58	-0.4
2,534,020	-		BT2019	0.58	+0.8
2,534,121	+		BT2019	0.63	-1.2
2,534,186	+		BT2019	0.66	+0.4
2,534,234	+		BT2019	0.68	-0.2
2,534,286	-		BT2019	0.70	-1.3
2,534,425	+		BT2019	0.77	-1.7
2,534,426	-		BT2019	0.77	-2.7
2,534,426	-		BT2019	0.77	-2.8
2,534,553	-		BT2019	0.83	-2.4
2,534,616	-		BT2019	0.86	-0.2
2,534,616	-		BT2019	0.86	-2.3
2,534,905	-				+0.5
2,534,958	-				-1.7
2,534,985	-				+0.3
2,534,989	-				-0.0
2,534,989	-				+1.0
2,535,171	+				-0.5
2,535,171	+				-2.4
2,535,172	-				+0.8
2,535,207	-		BT2020	0.10	+1.2
2,535,227	-		BT2020	0.11	-1.8
2,535,227	-		BT2020	0.11	+0.8
2,535,228	+		BT2020	0.11	-0.4
2,535,229	-		BT2020	0.11	+0.1
2,535,466	+		BT2020	0.22	-2.9
2,535,471	+		BT2020	0.22	+0.9
2,535,471	+		BT2020	0.22	+0.4
2,535,472	-		BT2020	0.22	-1.7
2,535,509	+		BT2020	0.24	+0.3
2,535,832	-		BT2020	0.38	-1.5
2,535,836	+		BT2020	0.38	+0.4
2,535,836	+		BT2020	0.38	-2.0