Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0834

Experiment: BHIS with Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0832 and BT0833 are separated by 267 nucleotidesBT0833 and BT0834 are separated by 178 nucleotidesBT0834 and BT0835 are separated by 3 nucleotides BT0832: BT0832 - putative phosphoserine phosphatase (NCBI ptt file), at 1,027,033 to 1,028,262 BT0832 BT0833: BT0833 - conserved hypothetical protein (NCBI ptt file), at 1,028,530 to 1,029,036 BT0833 BT0834: BT0834 - conserved hypothetical protein (NCBI ptt file), at 1,029,215 to 1,030,312 BT0834 BT0835: BT0835 - tRNA-guanine transglycosylase (NCBI ptt file), at 1,030,316 to 1,031,446 BT0835 Position (kb) 1029 1030 1031Strain fitness (log2 ratio) -3 -2 -1 0 1at 1028.490 kb on + strandat 1028.512 kb on + strandat 1028.539 kb on + strandat 1028.703 kb on + strand, within BT0833at 1028.708 kb on - strand, within BT0833at 1028.867 kb on + strand, within BT0833at 1028.872 kb on - strand, within BT0833at 1028.980 kb on - strand, within BT0833at 1029.020 kb on + strandat 1029.020 kb on + strandat 1029.021 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Paraquat dichloride 0.1 mg/ml
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1,028,490 + +0.6
1,028,512 + -0.7
1,028,539 + -0.6
1,028,703 + BT0833 0.34 +0.5
1,028,708 - BT0833 0.35 -0.0
1,028,867 + BT0833 0.66 -0.7
1,028,872 - BT0833 0.67 -2.1
1,028,980 - BT0833 0.89 -0.8
1,029,020 + +0.1
1,029,020 + -0.6
1,029,021 - -2.8

Or see this region's nucleotide sequence