Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13415

Experiment: Growth at pH7 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH7 and (C) Trisodium citrate
3,029,184	+				+0.1
3,029,185	-				+0.8
3,029,251	+				-1.4
3,029,251	+				+0.3
3,029,251	+				+1.1
3,029,252	-				+0.8
3,029,252	-				+1.0
3,029,252	-				-0.7
3,029,326	+		PFLU_RS13410	0.16	-0.4
3,029,411	-		PFLU_RS13410	0.25	-1.5
3,029,427	+		PFLU_RS13410	0.27	-0.0
3,029,427	+		PFLU_RS13410	0.27	-0.5
3,029,427	+		PFLU_RS13410	0.27	-0.8
3,029,428	-		PFLU_RS13410	0.27	+0.8
3,029,428	-		PFLU_RS13410	0.27	+1.3
3,029,428	-		PFLU_RS13410	0.27	+0.8
3,029,428	-		PFLU_RS13410	0.27	+0.5
3,029,448	+		PFLU_RS13410	0.29	-0.6
3,029,449	-		PFLU_RS13410	0.29	-0.7
3,029,449	-		PFLU_RS13410	0.29	+2.8
3,029,485	-		PFLU_RS13410	0.33	+1.8
3,029,485	-		PFLU_RS13410	0.33	+0.8
3,029,485	-		PFLU_RS13410	0.33	-1.5
3,029,499	+		PFLU_RS13410	0.35	-1.5
3,029,499	+		PFLU_RS13410	0.35	-0.6
3,029,499	+		PFLU_RS13410	0.35	+0.9
3,029,499	+		PFLU_RS13410	0.35	-1.4
3,029,499	+		PFLU_RS13410	0.35	+1.8
3,029,499	+		PFLU_RS13410	0.35	+1.4
3,029,500	-		PFLU_RS13410	0.35	-0.4
3,029,500	-		PFLU_RS13410	0.35	+0.0
3,029,500	-		PFLU_RS13410	0.35	-0.5
3,029,500	-		PFLU_RS13410	0.35	+0.7
3,029,500	-		PFLU_RS13410	0.35	+0.8
3,029,500	-		PFLU_RS13410	0.35	-0.6
3,029,500	-		PFLU_RS13410	0.35	-2.2
3,029,500	-		PFLU_RS13410	0.35	+0.0
3,029,527	+		PFLU_RS13410	0.38	+1.2
3,029,528	-		PFLU_RS13410	0.38	+1.4
3,029,577	+		PFLU_RS13410	0.43	+0.4
3,029,577	+		PFLU_RS13410	0.43	+1.4
3,029,578	-		PFLU_RS13410	0.44	-1.3
3,029,612	-		PFLU_RS13410	0.47	+0.8
3,029,713	-		PFLU_RS13410	0.58	-0.2
3,029,908	+		PFLU_RS13410	0.80	+1.2
3,029,908	+		PFLU_RS13410	0.80	+0.5
3,029,909	-		PFLU_RS13410	0.80	+0.8
3,029,910	+		PFLU_RS13410	0.80	-0.5
3,029,910	+		PFLU_RS13410	0.80	-0.8
3,029,910	+		PFLU_RS13410	0.80	+0.8
3,029,910	+		PFLU_RS13410	0.80	+1.1
3,029,910	+		PFLU_RS13410	0.80	-0.8
3,029,910	+		PFLU_RS13410	0.80	+0.2
3,029,910	+		PFLU_RS13410	0.80	-0.4
3,029,911	-		PFLU_RS13410	0.80	-0.1
3,029,911	-		PFLU_RS13410	0.80	+0.1
3,029,911	-		PFLU_RS13410	0.80	-0.2
3,029,911	-		PFLU_RS13410	0.80	+0.2
3,029,911	-		PFLU_RS13410	0.80	-1.9
3,029,911	-		PFLU_RS13410	0.80	-0.9
3,029,911	-		PFLU_RS13410	0.80	-0.3
3,029,911	-		PFLU_RS13410	0.80	+0.8
3,030,015	+				+0.2
3,030,015	+				-0.9
3,030,015	+				+0.4
3,030,016	-				-2.4
3,030,016	-				-2.0
3,030,016	-				-0.1
3,030,016	-				-1.5
3,030,016	-				+0.2
3,030,054	+				-1.2
3,030,054	+				+1.3
3,030,054	+				+0.6
3,030,054	+				-0.4
3,030,055	-				+0.1
3,030,055	-				-1.2
3,030,102	+				-0.4
3,030,102	+				+0.8
3,030,102	+				+1.7
3,030,103	-				-0.2
3,030,103	-				+1.2
3,030,103	-				+0.5
3,030,119	-				-2.0
3,030,124	-				+0.4
3,030,162	+				-0.1
3,030,164	+				+0.8
3,030,164	+				+1.8
3,030,165	-				+0.0
3,030,165	-				-0.7
3,030,165	-				+1.9
3,030,201	+				+0.3
3,030,201	+				-0.2
3,030,201	+				-1.1
3,030,201	+				-1.4
3,030,201	+				-0.0
3,030,201	+				-0.7
3,030,201	+				-2.0
3,030,201	+				-0.1
3,030,201	+				-1.0
3,030,201	+				+0.8
3,030,201	+				-0.2
3,030,201	+				+1.8
3,030,201	+				-0.4
3,030,201	+				-0.7
3,030,201	+				-1.1
3,030,201	+				+0.5
3,030,201	+				+1.4
3,030,201	+				-1.6
3,030,201	+				+0.1
3,030,201	+				+0.8
3,030,201	+				+1.6
3,030,201	+				+0.2
3,030,201	+				-0.3
3,030,201	+				+0.9
3,030,201	+				+1.4
3,030,201	+				+0.0
3,030,201	+				-0.2
3,030,201	+				+0.8
3,030,201	+				-0.2
3,030,201	+				-0.4
3,030,201	+				-0.2
3,030,202	-				-2.5
3,030,202	-				+1.3
3,030,202	-				-0.9
3,030,202	-				+1.2
3,030,202	-				+0.8
3,030,202	-				-1.2
3,030,202	-				+0.6
3,030,202	-				-0.4
3,030,202	-				-1.2
3,030,202	-				+1.2
3,030,202	-				+1.4
3,030,202	-				-2.4
3,030,202	-				+0.1
3,030,202	-				-0.8
3,030,202	-				+0.4
3,030,202	-				-0.5
3,030,202	-				+0.3
3,030,202	-				+0.3
3,030,202	-				+1.4
3,030,202	-				-0.8
3,030,208	+				-1.3
3,030,208	+				+0.2
3,030,209	-				-1.4
3,030,214	+				-1.5
3,030,215	-				+0.1
3,030,394	-		PFLU_RS13415	0.18	-0.4
3,030,394	-		PFLU_RS13415	0.18	-0.7
3,030,496	+		PFLU_RS13415	0.26	-0.9
3,030,497	-		PFLU_RS13415	0.26	-0.5
3,030,574	+		PFLU_RS13415	0.32	-1.5
3,030,574	+		PFLU_RS13415	0.32	-2.8
3,030,574	+		PFLU_RS13415	0.32	-0.4
3,030,574	+		PFLU_RS13415	0.32	+0.5
3,030,575	-		PFLU_RS13415	0.32	-1.4
3,030,575	-		PFLU_RS13415	0.32	-1.5
3,030,647	+		PFLU_RS13415	0.38	-0.0
3,030,647	+		PFLU_RS13415	0.38	-0.5
3,030,647	+		PFLU_RS13415	0.38	+0.6
3,030,648	-		PFLU_RS13415	0.38	+1.5
3,030,648	-		PFLU_RS13415	0.38	-2.4
3,030,648	-		PFLU_RS13415	0.38	-0.5
3,030,672	+		PFLU_RS13415	0.40	-0.0
3,030,673	-		PFLU_RS13415	0.40	-0.4
3,030,681	+		PFLU_RS13415	0.40	-0.2
3,030,681	+		PFLU_RS13415	0.40	+1.2
3,030,681	+		PFLU_RS13415	0.40	+1.3
3,030,681	+		PFLU_RS13415	0.40	-0.2
3,030,681	+		PFLU_RS13415	0.40	-1.2
3,030,681	+		PFLU_RS13415	0.40	-0.2
3,030,681	+		PFLU_RS13415	0.40	+1.1
3,030,681	+		PFLU_RS13415	0.40	-1.0
3,030,681	+		PFLU_RS13415	0.40	-0.7
3,030,681	+		PFLU_RS13415	0.40	-0.4
3,030,681	+		PFLU_RS13415	0.40	+1.2
3,030,682	-		PFLU_RS13415	0.40	+0.8
3,030,682	-		PFLU_RS13415	0.40	+0.8
3,030,682	-		PFLU_RS13415	0.40	+0.5
3,030,682	-		PFLU_RS13415	0.40	-0.0
3,030,682	-		PFLU_RS13415	0.40	-0.4
3,030,682	-		PFLU_RS13415	0.40	-0.0
3,030,682	-		PFLU_RS13415	0.40	-0.0
3,030,682	-		PFLU_RS13415	0.40	-1.0
3,030,682	-		PFLU_RS13415	0.40	+0.8
3,030,682	-		PFLU_RS13415	0.40	-0.7
3,030,682	-		PFLU_RS13415	0.40	-0.2
3,030,945	+		PFLU_RS13415	0.61	-1.2
3,030,945	+		PFLU_RS13415	0.61	-0.5
3,030,946	-		PFLU_RS13415	0.61	+0.1
3,030,946	-		PFLU_RS13415	0.61	-1.1
3,031,022	+		PFLU_RS13415	0.67	+0.2
3,031,196	+		PFLU_RS13415	0.80	+2.1
3,031,243	+		PFLU_RS13415	0.84	-0.2
3,031,345	+				+1.2
3,031,346	-				-0.8
3,031,346	-				-0.2
3,031,372	+				-0.3
3,031,372	+				+0.4
3,031,372	+				-0.4
3,031,372	+				-0.4
3,031,372	+				-0.7
3,031,372	+				-0.4
3,031,372	+				-0.5
3,031,373	-				-0.6
3,031,373	-				+1.0
3,031,373	-				-0.4
3,031,373	-				+0.4
3,031,373	-				-0.1
3,031,373	-				+0.0
3,031,373	-				+0.8
3,031,413	+				-1.2
3,031,413	+				-0.5
3,031,413	+				+1.5
3,031,413	+				+0.8
3,031,413	+				+0.6
3,031,413	+				+0.2
3,031,413	+				-0.1
3,031,413	+				+0.1
3,031,413	+				+0.5
3,031,413	+				-0.1
3,031,414	-				+0.2
3,031,414	-				+0.4
3,031,414	-				-2.2
3,031,414	-				+3.6
3,031,414	-				+1.5
3,031,414	-				-1.5
3,031,414	-				+0.3
3,031,414	-				-1.5
3,031,493	+				+0.6
3,031,500	+				-0.6
3,031,520	+				+0.4
3,031,520	+				-1.8
3,031,520	+				+2.4
3,031,520	+				-0.3
3,031,520	+				-0.8
3,031,520	+				-0.2
3,031,520	+				+0.5
3,031,520	+				+2.0
3,031,521	-				+1.0
3,031,521	-				+0.3
3,031,521	-				-1.1
3,031,532	+				+0.6
3,031,532	+				+0.8
3,031,533	-				+0.8
3,031,536	+				+0.3
3,031,536	+				+0.1
3,031,537	-				-1.1
3,031,537	-				-1.0
3,031,557	-				+0.6
3,031,581	+				+1.1
3,031,582	-				+0.4
3,031,595	+				+0.6
3,031,595	+				-0.6
3,031,596	-				-1.4
3,031,596	-				+0.4
3,031,596	-				+0.0
3,031,596	-				-0.3
3,031,596	-				-0.4
3,031,741	-		PFLU_RS13420	0.26	-0.0
3,031,751	+		PFLU_RS13420	0.28	+2.6
3,031,751	+		PFLU_RS13420	0.28	-0.5
3,031,752	-		PFLU_RS13420	0.29	+0.4
3,031,752	-		PFLU_RS13420	0.29	-0.6
3,031,752	-		PFLU_RS13420	0.29	-0.2
3,031,752	-		PFLU_RS13420	0.29	+0.8
3,031,752	-		PFLU_RS13420	0.29	+1.3
3,031,957	+		PFLU_RS13420	0.69	-1.4
3,031,957	+		PFLU_RS13420	0.69	-0.1
3,031,958	-		PFLU_RS13420	0.70	-0.5
3,032,015	+		PFLU_RS13420	0.81	+0.5
3,032,016	-		PFLU_RS13420	0.81	-0.2
3,032,016	-		PFLU_RS13420	0.81	+1.8
3,032,080	+				+0.1
3,032,080	+				-0.3
3,032,081	-				-1.0
3,032,081	-				-0.1
3,032,081	-				-1.8
3,032,081	-				+0.4
3,032,108	-				-2.2
3,032,108	-				-0.4
3,032,120	-				+1.6
3,032,125	-				-1.8
3,032,156	+				+0.0
3,032,157	-				-1.0
3,032,157	-				-0.6
3,032,157	-				-0.8
3,032,228	-				-0.3
3,032,228	-				+0.9
3,032,249	+				-1.5
3,032,250	-				+0.8
3,032,250	-				+0.6
3,032,250	-				+0.8
3,032,260	+				-0.3
3,032,260	+				-1.4
3,032,260	+				-0.8
3,032,260	+				+1.3
3,032,260	+				+0.9
3,032,261	-				-0.0
3,032,261	-				+0.3
3,032,261	-				+0.8
3,032,261	-				+0.5
3,032,261	-				-1.5
3,032,261	-				-1.5
3,032,303	+				+3.1
3,032,303	+				-1.5
3,032,303	+				+0.8
3,032,304	-				+1.1
3,032,373	+				-2.2
3,032,374	-				-0.7