Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07350

Experiment: H2 N-free with 10mM Ammonium chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS07345 and MMJJ_RS07350 are separated by 13 nucleotidesMMJJ_RS07350 and MMJJ_RS07355 are separated by 44 nucleotidesMMJJ_RS07355 and MMJJ_RS07360 are separated by 15 nucleotides MMJJ_RS07345: MMJJ_RS07345 - homocysteine biosynthesis protein, at 1,349,284 to 1,350,825 _RS07345 MMJJ_RS07350: MMJJ_RS07350 - 4Fe-4S binding protein, at 1,350,839 to 1,351,237 _RS07350 MMJJ_RS07355: MMJJ_RS07355 - MoaD/ThiS family protein, at 1,351,282 to 1,351,536 _RS07355 MMJJ_RS07360: MMJJ_RS07360 - TIGR00269 family protein, at 1,351,552 to 1,352,487 _RS07360 Position (kb) 1350 1351 1352Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1350.452 kb on - strand, within MMJJ_RS07345at 1350.459 kb on - strand, within MMJJ_RS07345at 1350.460 kb on + strand, within MMJJ_RS07345at 1350.462 kb on + strand, within MMJJ_RS07345at 1350.462 kb on + strand, within MMJJ_RS07345at 1350.652 kb on + strand, within MMJJ_RS07345at 1350.655 kb on - strand, within MMJJ_RS07345at 1350.655 kb on - strand, within MMJJ_RS07345at 1350.655 kb on - strand, within MMJJ_RS07345at 1350.655 kb on - strand, within MMJJ_RS07345at 1350.655 kb on - strandat 1350.656 kb on + strand, within MMJJ_RS07345at 1350.656 kb on + strand, within MMJJ_RS07345at 1350.656 kb on + strand, within MMJJ_RS07345at 1350.656 kb on + strand, within MMJJ_RS07345at 1350.657 kb on - strand, within MMJJ_RS07345at 1350.657 kb on - strand, within MMJJ_RS07345at 1350.657 kb on - strand, within MMJJ_RS07345at 1350.658 kb on + strand, within MMJJ_RS07345at 1350.658 kb on + strand, within MMJJ_RS07345at 1350.658 kb on + strand, within MMJJ_RS07345at 1350.658 kb on + strand, within MMJJ_RS07345at 1350.659 kb on - strandat 1350.659 kb on - strand, within MMJJ_RS07345at 1350.660 kb on + strand, within MMJJ_RS07345at 1350.660 kb on + strand, within MMJJ_RS07345at 1350.660 kb on + strand, within MMJJ_RS07345at 1350.660 kb on + strand, within MMJJ_RS07345at 1350.660 kb on + strand, within MMJJ_RS07345at 1350.660 kb on + strand, within MMJJ_RS07345at 1350.662 kb on - strand, within MMJJ_RS07345at 1350.684 kb on - strandat 1350.685 kb on + strandat 1350.784 kb on + strandat 1350.879 kb on - strand, within MMJJ_RS07350at 1350.921 kb on - strand, within MMJJ_RS07350at 1350.927 kb on - strand, within MMJJ_RS07350at 1350.927 kb on - strand, within MMJJ_RS07350at 1350.931 kb on - strand, within MMJJ_RS07350at 1350.932 kb on + strand, within MMJJ_RS07350at 1350.937 kb on + strand, within MMJJ_RS07350at 1351.020 kb on - strand, within MMJJ_RS07350at 1351.200 kb on - strandat 1351.219 kb on - strandat 1351.225 kb on + strandat 1351.236 kb on + strandat 1351.248 kb on + strandat 1351.272 kb on + strandat 1351.289 kb on - strandat 1351.350 kb on + strand, within MMJJ_RS07355at 1351.355 kb on - strand, within MMJJ_RS07355at 1351.409 kb on - strand, within MMJJ_RS07355at 1351.409 kb on - strand, within MMJJ_RS07355at 1351.443 kb on + strand, within MMJJ_RS07355at 1351.443 kb on + strand, within MMJJ_RS07355at 1351.483 kb on + strand, within MMJJ_RS07355at 1351.484 kb on - strand, within MMJJ_RS07355at 1351.484 kb on - strand, within MMJJ_RS07355at 1351.485 kb on + strand, within MMJJ_RS07355at 1351.485 kb on + strand, within MMJJ_RS07355at 1351.485 kb on + strand, within MMJJ_RS07355at 1351.485 kb on + strand, within MMJJ_RS07355at 1351.487 kb on - strand, within MMJJ_RS07355at 1351.487 kb on - strand, within MMJJ_RS07355at 1351.492 kb on + strand, within MMJJ_RS07355at 1351.512 kb on + strandat 1351.514 kb on + strandat 1351.514 kb on + strandat 1351.514 kb on + strandat 1351.541 kb on + strandat 1351.583 kb on - strandat 1351.584 kb on + strandat 1351.585 kb on - strandat 1351.585 kb on - strandat 1351.617 kb on - strandat 1352.086 kb on - strand, within MMJJ_RS07360at 1352.192 kb on - strand, within MMJJ_RS07360

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM Ammonium chloride
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1,350,452 - MMJJ_RS07345 0.76 -3.0
1,350,459 - MMJJ_RS07345 0.76 -1.6
1,350,460 + MMJJ_RS07345 0.76 -1.4
1,350,462 + MMJJ_RS07345 0.76 -0.1
1,350,462 + MMJJ_RS07345 0.76 -0.7
1,350,652 + MMJJ_RS07345 0.89 -1.8
1,350,655 - MMJJ_RS07345 0.89 -2.6
1,350,655 - MMJJ_RS07345 0.89 -2.6
1,350,655 - MMJJ_RS07345 0.89 -1.4
1,350,655 - MMJJ_RS07345 0.89 -0.2
1,350,655 - -0.6
1,350,656 + MMJJ_RS07345 0.89 -0.1
1,350,656 + MMJJ_RS07345 0.89 -2.3
1,350,656 + MMJJ_RS07345 0.89 -1.4
1,350,656 + MMJJ_RS07345 0.89 -1.2
1,350,657 - MMJJ_RS07345 0.89 -2.2
1,350,657 - MMJJ_RS07345 0.89 -3.1
1,350,657 - MMJJ_RS07345 0.89 -1.8
1,350,658 + MMJJ_RS07345 0.89 -4.1
1,350,658 + MMJJ_RS07345 0.89 -1.2
1,350,658 + MMJJ_RS07345 0.89 -1.8
1,350,658 + MMJJ_RS07345 0.89 -1.6
1,350,659 - -0.6
1,350,659 - MMJJ_RS07345 0.89 -1.8
1,350,660 + MMJJ_RS07345 0.89 -0.2
1,350,660 + MMJJ_RS07345 0.89 -3.4
1,350,660 + MMJJ_RS07345 0.89 +0.1
1,350,660 + MMJJ_RS07345 0.89 -0.2
1,350,660 + MMJJ_RS07345 0.89 -0.4
1,350,660 + MMJJ_RS07345 0.89 -1.4
1,350,662 - MMJJ_RS07345 0.89 -0.2
1,350,684 - -0.2
1,350,685 + -0.6
1,350,784 + -3.0
1,350,879 - MMJJ_RS07350 0.10 -4.0
1,350,921 - MMJJ_RS07350 0.21 -3.7
1,350,927 - MMJJ_RS07350 0.22 -1.9
1,350,927 - MMJJ_RS07350 0.22 -1.4
1,350,931 - MMJJ_RS07350 0.23 -1.4
1,350,932 + MMJJ_RS07350 0.23 +0.8
1,350,937 + MMJJ_RS07350 0.25 -2.1
1,351,020 - MMJJ_RS07350 0.45 -0.9
1,351,200 - -3.3
1,351,219 - +0.5
1,351,225 + -0.5
1,351,236 + +1.7
1,351,248 + +0.3
1,351,272 + -0.8
1,351,289 - -1.4
1,351,350 + MMJJ_RS07355 0.27 -1.6
1,351,355 - MMJJ_RS07355 0.29 -1.2
1,351,409 - MMJJ_RS07355 0.50 -0.6
1,351,409 - MMJJ_RS07355 0.50 +0.6
1,351,443 + MMJJ_RS07355 0.63 -1.2
1,351,443 + MMJJ_RS07355 0.63 -0.6
1,351,483 + MMJJ_RS07355 0.79 -2.6
1,351,484 - MMJJ_RS07355 0.79 +0.0
1,351,484 - MMJJ_RS07355 0.79 -0.6
1,351,485 + MMJJ_RS07355 0.80 -1.7
1,351,485 + MMJJ_RS07355 0.80 -1.8
1,351,485 + MMJJ_RS07355 0.80 -0.8
1,351,485 + MMJJ_RS07355 0.80 -3.6
1,351,487 - MMJJ_RS07355 0.80 -2.8
1,351,487 - MMJJ_RS07355 0.80 -3.1
1,351,492 + MMJJ_RS07355 0.82 -0.9
1,351,512 + -0.0
1,351,514 + -1.3
1,351,514 + -2.1
1,351,514 + -2.5
1,351,541 + +1.2
1,351,583 - -0.2
1,351,584 + -1.2
1,351,585 - -2.2
1,351,585 - -1.9
1,351,617 - -2.1
1,352,086 - MMJJ_RS07360 0.57 +0.0
1,352,192 - MMJJ_RS07360 0.68 -1.2

Or see this region's nucleotide sequence