Experiment: H2 N-free with 10mM Ammonium chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04675 and MMJJ_RS04680 are separated by 29 nucleotides MMJJ_RS04680 and MMJJ_RS04685 are separated by 44 nucleotides MMJJ_RS04685 and MMJJ_RS04690 are separated by 49 nucleotides
MMJJ_RS04675: MMJJ_RS04675 - thiamine pyrophosphate-binding protein, at 872,574 to 874,079
_RS04675
MMJJ_RS04680: MMJJ_RS04680 - topoisomerase DNA-binding C4 zinc finger domain-containing protein, at 874,109 to 874,981
_RS04680
MMJJ_RS04685: MMJJ_RS04685 - carbamoyltransferase HypF, at 875,026 to 877,341
_RS04685
MMJJ_RS04690: MMJJ_RS04690 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 877,391 to 878,518
_RS04690
Position (kb) 875
876
877
878 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 874.057 kb on - strand at 874.090 kb on - strand at 874.091 kb on + strand at 874.231 kb on - strand, within MMJJ_RS04680 at 874.232 kb on + strand, within MMJJ_RS04680 at 874.329 kb on + strand, within MMJJ_RS04680 at 874.332 kb on - strand, within MMJJ_RS04680 at 874.333 kb on + strand, within MMJJ_RS04680 at 874.366 kb on - strand, within MMJJ_RS04680 at 874.366 kb on - strand, within MMJJ_RS04680 at 874.367 kb on + strand, within MMJJ_RS04680 at 874.388 kb on - strand, within MMJJ_RS04680 at 874.420 kb on + strand, within MMJJ_RS04680 at 874.468 kb on - strand, within MMJJ_RS04680 at 874.469 kb on + strand, within MMJJ_RS04680 at 874.498 kb on - strand, within MMJJ_RS04680 at 874.499 kb on + strand, within MMJJ_RS04680 at 874.504 kb on - strand, within MMJJ_RS04680 at 874.505 kb on + strand, within MMJJ_RS04680 at 874.505 kb on + strand, within MMJJ_RS04680 at 874.519 kb on + strand, within MMJJ_RS04680 at 874.572 kb on + strand, within MMJJ_RS04680 at 874.589 kb on - strand, within MMJJ_RS04680 at 874.590 kb on + strand, within MMJJ_RS04680 at 874.624 kb on - strand, within MMJJ_RS04680 at 874.690 kb on - strand, within MMJJ_RS04680 at 874.690 kb on - strand, within MMJJ_RS04680 at 874.720 kb on + strand, within MMJJ_RS04680 at 874.758 kb on + strand, within MMJJ_RS04680 at 874.758 kb on + strand, within MMJJ_RS04680 at 874.762 kb on - strand, within MMJJ_RS04680 at 874.763 kb on + strand, within MMJJ_RS04680 at 874.766 kb on - strand, within MMJJ_RS04680 at 874.766 kb on - strand at 874.767 kb on + strand, within MMJJ_RS04680 at 874.767 kb on + strand, within MMJJ_RS04680 at 874.767 kb on + strand, within MMJJ_RS04680 at 874.779 kb on - strand, within MMJJ_RS04680 at 874.793 kb on + strand, within MMJJ_RS04680 at 874.796 kb on - strand, within MMJJ_RS04680 at 874.797 kb on + strand, within MMJJ_RS04680 at 874.797 kb on + strand, within MMJJ_RS04680 at 874.816 kb on - strand, within MMJJ_RS04680 at 874.827 kb on + strand, within MMJJ_RS04680 at 874.867 kb on - strand, within MMJJ_RS04680 at 874.893 kb on - strand, within MMJJ_RS04680 at 874.900 kb on - strand at 874.956 kb on + strand at 874.985 kb on + strand at 874.985 kb on + strand at 874.997 kb on - strand at 875.001 kb on - strand at 875.002 kb on + strand at 875.534 kb on + strand, within MMJJ_RS04685 at 875.535 kb on - strand, within MMJJ_RS04685 at 875.535 kb on - strand, within MMJJ_RS04685 at 875.551 kb on + strand, within MMJJ_RS04685 at 875.630 kb on - strand, within MMJJ_RS04685 at 875.631 kb on + strand, within MMJJ_RS04685 at 875.634 kb on - strand, within MMJJ_RS04685 at 875.642 kb on - strand, within MMJJ_RS04685 at 875.643 kb on + strand, within MMJJ_RS04685 at 875.682 kb on + strand, within MMJJ_RS04685 at 875.816 kb on - strand, within MMJJ_RS04685 at 875.854 kb on + strand, within MMJJ_RS04685 at 876.012 kb on + strand, within MMJJ_RS04685 at 876.127 kb on + strand, within MMJJ_RS04685 at 876.216 kb on + strand at 876.322 kb on - strand, within MMJJ_RS04685 at 876.343 kb on - strand, within MMJJ_RS04685 at 876.400 kb on + strand at 876.400 kb on + strand, within MMJJ_RS04685 at 876.420 kb on + strand, within MMJJ_RS04685 at 876.527 kb on + strand, within MMJJ_RS04685 at 876.610 kb on + strand, within MMJJ_RS04685 at 876.626 kb on - strand, within MMJJ_RS04685 at 876.710 kb on + strand at 876.781 kb on + strand, within MMJJ_RS04685 at 876.784 kb on - strand, within MMJJ_RS04685 at 876.784 kb on - strand at 876.809 kb on - strand, within MMJJ_RS04685 at 876.810 kb on + strand, within MMJJ_RS04685 at 876.852 kb on - strand, within MMJJ_RS04685 at 876.853 kb on + strand at 876.916 kb on - strand, within MMJJ_RS04685 at 876.974 kb on - strand, within MMJJ_RS04685 at 877.026 kb on + strand, within MMJJ_RS04685 at 877.028 kb on - strand at 877.028 kb on - strand, within MMJJ_RS04685 at 877.028 kb on - strand, within MMJJ_RS04685 at 877.029 kb on + strand, within MMJJ_RS04685 at 877.029 kb on + strand, within MMJJ_RS04685 at 877.167 kb on - strand at 877.185 kb on - strand at 877.211 kb on - strand at 877.212 kb on + strand at 877.336 kb on + strand at 877.370 kb on + strand at 877.376 kb on - strand at 877.377 kb on + strand at 877.382 kb on - strand at 877.382 kb on - strand at 877.382 kb on - strand at 877.383 kb on + strand at 877.386 kb on - strand at 877.386 kb on - strand at 877.387 kb on + strand at 877.387 kb on + strand at 877.389 kb on - strand at 877.393 kb on + strand at 877.393 kb on + strand at 877.393 kb on + strand at 877.396 kb on - strand at 877.397 kb on + strand at 877.397 kb on + strand at 877.398 kb on - strand at 877.411 kb on - strand at 877.412 kb on + strand at 877.412 kb on + strand at 877.441 kb on - strand at 877.474 kb on + strand at 877.474 kb on + strand at 877.476 kb on + strand at 877.505 kb on - strand, within MMJJ_RS04690 at 877.505 kb on - strand, within MMJJ_RS04690 at 877.505 kb on - strand, within MMJJ_RS04690 at 877.506 kb on + strand, within MMJJ_RS04690 at 877.506 kb on + strand, within MMJJ_RS04690 at 877.506 kb on + strand, within MMJJ_RS04690 at 877.529 kb on - strand, within MMJJ_RS04690 at 877.530 kb on + strand, within MMJJ_RS04690 at 877.532 kb on + strand, within MMJJ_RS04690 at 877.590 kb on + strand, within MMJJ_RS04690 at 877.590 kb on + strand, within MMJJ_RS04690 at 877.590 kb on + strand, within MMJJ_RS04690 at 877.608 kb on - strand, within MMJJ_RS04690 at 877.608 kb on - strand, within MMJJ_RS04690 at 877.619 kb on - strand, within MMJJ_RS04690 at 877.620 kb on + strand, within MMJJ_RS04690 at 877.620 kb on + strand, within MMJJ_RS04690 at 877.643 kb on - strand, within MMJJ_RS04690 at 877.643 kb on - strand, within MMJJ_RS04690 at 877.644 kb on + strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.653 kb on + strand, within MMJJ_RS04690 at 877.653 kb on + strand, within MMJJ_RS04690 at 877.661 kb on + strand, within MMJJ_RS04690 at 877.661 kb on + strand, within MMJJ_RS04690 at 877.661 kb on + strand, within MMJJ_RS04690 at 877.763 kb on + strand, within MMJJ_RS04690 at 877.763 kb on + strand, within MMJJ_RS04690 at 877.827 kb on + strand, within MMJJ_RS04690 at 877.827 kb on + strand, within MMJJ_RS04690 at 877.856 kb on - strand, within MMJJ_RS04690 at 878.040 kb on + strand, within MMJJ_RS04690 at 878.049 kb on + strand, within MMJJ_RS04690 at 878.081 kb on - strand, within MMJJ_RS04690 at 878.081 kb on - strand, within MMJJ_RS04690 at 878.081 kb on - strand, within MMJJ_RS04690 at 878.096 kb on - strand, within MMJJ_RS04690 at 878.097 kb on + strand, within MMJJ_RS04690 at 878.104 kb on + strand, within MMJJ_RS04690 at 878.171 kb on + strand, within MMJJ_RS04690 at 878.171 kb on + strand, within MMJJ_RS04690 at 878.171 kb on + strand, within MMJJ_RS04690 at 878.174 kb on - strand, within MMJJ_RS04690 at 878.174 kb on - strand, within MMJJ_RS04690 at 878.175 kb on + strand, within MMJJ_RS04690 at 878.175 kb on + strand, within MMJJ_RS04690 at 878.180 kb on + strand, within MMJJ_RS04690 at 878.214 kb on + strand, within MMJJ_RS04690 at 878.216 kb on - strand, within MMJJ_RS04690 at 878.246 kb on - strand, within MMJJ_RS04690 at 878.246 kb on - strand, within MMJJ_RS04690 at 878.279 kb on - strand, within MMJJ_RS04690
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM Ammonium chloride remove 874,057 - -0.2 874,090 - -3.0 874,091 + -1.7 874,231 - MMJJ_RS04680 0.14 -1.2 874,232 + MMJJ_RS04680 0.14 -1.4 874,329 + MMJJ_RS04680 0.25 -1.0 874,332 - MMJJ_RS04680 0.26 -2.7 874,333 + MMJJ_RS04680 0.26 -1.6 874,366 - MMJJ_RS04680 0.29 -2.0 874,366 - MMJJ_RS04680 0.29 -0.4 874,367 + MMJJ_RS04680 0.30 -1.3 874,388 - MMJJ_RS04680 0.32 -0.4 874,420 + MMJJ_RS04680 0.36 -2.0 874,468 - MMJJ_RS04680 0.41 -0.5 874,469 + MMJJ_RS04680 0.41 -0.3 874,498 - MMJJ_RS04680 0.45 -1.8 874,499 + MMJJ_RS04680 0.45 -1.8 874,504 - MMJJ_RS04680 0.45 -1.7 874,505 + MMJJ_RS04680 0.45 -0.2 874,505 + MMJJ_RS04680 0.45 -0.3 874,519 + MMJJ_RS04680 0.47 -1.4 874,572 + MMJJ_RS04680 0.53 -1.0 874,589 - MMJJ_RS04680 0.55 -2.1 874,590 + MMJJ_RS04680 0.55 -2.3 874,624 - MMJJ_RS04680 0.59 -1.4 874,690 - MMJJ_RS04680 0.67 -0.9 874,690 - MMJJ_RS04680 0.67 -2.1 874,720 + MMJJ_RS04680 0.70 +0.3 874,758 + MMJJ_RS04680 0.74 -1.6 874,758 + MMJJ_RS04680 0.74 -0.9 874,762 - MMJJ_RS04680 0.75 -0.1 874,763 + MMJJ_RS04680 0.75 -2.1 874,766 - MMJJ_RS04680 0.75 -1.2 874,766 - +0.4 874,767 + MMJJ_RS04680 0.75 -2.1 874,767 + MMJJ_RS04680 0.75 -0.1 874,767 + MMJJ_RS04680 0.75 -0.1 874,779 - MMJJ_RS04680 0.77 -1.0 874,793 + MMJJ_RS04680 0.78 -0.3 874,796 - MMJJ_RS04680 0.79 -0.8 874,797 + MMJJ_RS04680 0.79 -1.5 874,797 + MMJJ_RS04680 0.79 -1.6 874,816 - MMJJ_RS04680 0.81 -1.3 874,827 + MMJJ_RS04680 0.82 -4.0 874,867 - MMJJ_RS04680 0.87 -0.7 874,893 - MMJJ_RS04680 0.90 -0.6 874,900 - +0.3 874,956 + -2.6 874,985 + +0.4 874,985 + +1.2 874,997 - -1.5 875,001 - +1.3 875,002 + -1.6 875,534 + MMJJ_RS04685 0.22 -0.8 875,535 - MMJJ_RS04685 0.22 -1.5 875,535 - MMJJ_RS04685 0.22 -2.3 875,551 + MMJJ_RS04685 0.23 -1.3 875,630 - MMJJ_RS04685 0.26 -1.2 875,631 + MMJJ_RS04685 0.26 -1.0 875,634 - MMJJ_RS04685 0.26 -1.0 875,642 - MMJJ_RS04685 0.27 -1.5 875,643 + MMJJ_RS04685 0.27 -3.3 875,682 + MMJJ_RS04685 0.28 -1.1 875,816 - MMJJ_RS04685 0.34 -3.8 875,854 + MMJJ_RS04685 0.36 -2.8 876,012 + MMJJ_RS04685 0.43 -2.3 876,127 + MMJJ_RS04685 0.48 -3.6 876,216 + -1.0 876,322 - MMJJ_RS04685 0.56 -1.3 876,343 - MMJJ_RS04685 0.57 -3.8 876,400 + +0.0 876,400 + MMJJ_RS04685 0.59 -2.3 876,420 + MMJJ_RS04685 0.60 -3.1 876,527 + MMJJ_RS04685 0.65 -2.4 876,610 + MMJJ_RS04685 0.68 -2.7 876,626 - MMJJ_RS04685 0.69 -3.7 876,710 + +4.4 876,781 + MMJJ_RS04685 0.76 -2.9 876,784 - MMJJ_RS04685 0.76 -3.3 876,784 - -0.6 876,809 - MMJJ_RS04685 0.77 -2.0 876,810 + MMJJ_RS04685 0.77 -1.0 876,852 - MMJJ_RS04685 0.79 -1.6 876,853 + -1.3 876,916 - MMJJ_RS04685 0.82 -1.8 876,974 - MMJJ_RS04685 0.84 -0.8 877,026 + MMJJ_RS04685 0.86 -2.6 877,028 - -1.0 877,028 - MMJJ_RS04685 0.86 -1.1 877,028 - MMJJ_RS04685 0.86 -3.3 877,029 + MMJJ_RS04685 0.86 -1.7 877,029 + MMJJ_RS04685 0.86 -2.4 877,167 - -2.8 877,185 - -2.1 877,211 - -2.3 877,212 + -1.6 877,336 + +1.2 877,370 + -1.2 877,376 - +0.8 877,377 + -0.1 877,382 - -0.8 877,382 - -1.5 877,382 - -1.3 877,383 + +1.3 877,386 - +0.8 877,386 - -0.7 877,387 + -0.4 877,387 + +0.7 877,389 - -1.1 877,393 + +0.4 877,393 + +0.8 877,393 + +0.7 877,396 - -0.8 877,397 + +2.3 877,397 + +0.2 877,398 - +1.1 877,411 - +0.4 877,412 + -0.9 877,412 + +1.0 877,441 - -0.3 877,474 + -0.1 877,474 + +0.6 877,476 + -0.4 877,505 - MMJJ_RS04690 0.10 +0.3 877,505 - MMJJ_RS04690 0.10 -0.7 877,505 - MMJJ_RS04690 0.10 +0.8 877,506 + MMJJ_RS04690 0.10 -0.4 877,506 + MMJJ_RS04690 0.10 -0.9 877,506 + MMJJ_RS04690 0.10 -0.8 877,529 - MMJJ_RS04690 0.12 +0.8 877,530 + MMJJ_RS04690 0.12 +0.5 877,532 + MMJJ_RS04690 0.12 +0.9 877,590 + MMJJ_RS04690 0.18 -0.0 877,590 + MMJJ_RS04690 0.18 +0.6 877,590 + MMJJ_RS04690 0.18 -0.1 877,608 - MMJJ_RS04690 0.19 +0.2 877,608 - MMJJ_RS04690 0.19 -0.5 877,619 - MMJJ_RS04690 0.20 +0.5 877,620 + MMJJ_RS04690 0.20 -0.6 877,620 + MMJJ_RS04690 0.20 +1.3 877,643 - MMJJ_RS04690 0.22 -0.3 877,643 - MMJJ_RS04690 0.22 +2.7 877,644 + MMJJ_RS04690 0.22 +0.2 877,652 - MMJJ_RS04690 0.23 +0.3 877,652 - MMJJ_RS04690 0.23 +1.0 877,652 - MMJJ_RS04690 0.23 -0.5 877,652 - MMJJ_RS04690 0.23 +0.8 877,652 - MMJJ_RS04690 0.23 -0.8 877,652 - MMJJ_RS04690 0.23 +0.7 877,653 + MMJJ_RS04690 0.23 -0.7 877,653 + MMJJ_RS04690 0.23 -1.5 877,661 + MMJJ_RS04690 0.24 +0.5 877,661 + MMJJ_RS04690 0.24 +0.1 877,661 + MMJJ_RS04690 0.24 +0.4 877,763 + MMJJ_RS04690 0.33 -0.0 877,763 + MMJJ_RS04690 0.33 -1.1 877,827 + MMJJ_RS04690 0.39 -1.5 877,827 + MMJJ_RS04690 0.39 +0.1 877,856 - MMJJ_RS04690 0.41 -0.3 878,040 + MMJJ_RS04690 0.58 +0.6 878,049 + MMJJ_RS04690 0.58 +0.9 878,081 - MMJJ_RS04690 0.61 -0.7 878,081 - MMJJ_RS04690 0.61 -0.0 878,081 - MMJJ_RS04690 0.61 -0.3 878,096 - MMJJ_RS04690 0.62 -0.7 878,097 + MMJJ_RS04690 0.63 +0.7 878,104 + MMJJ_RS04690 0.63 +0.4 878,171 + MMJJ_RS04690 0.69 -0.4 878,171 + MMJJ_RS04690 0.69 -0.2 878,171 + MMJJ_RS04690 0.69 +0.9 878,174 - MMJJ_RS04690 0.69 -0.2 878,174 - MMJJ_RS04690 0.69 -0.5 878,175 + MMJJ_RS04690 0.70 +0.9 878,175 + MMJJ_RS04690 0.70 -0.1 878,180 + MMJJ_RS04690 0.70 +0.8 878,214 + MMJJ_RS04690 0.73 -3.1 878,216 - MMJJ_RS04690 0.73 +0.5 878,246 - MMJJ_RS04690 0.76 +0.9 878,246 - MMJJ_RS04690 0.76 +0.3 878,279 - MMJJ_RS04690 0.79 +0.6
Or see this region's nucleotide sequence