Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03840

Experiment: H2 N-free with 10mM Ammonium chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03830 and MMJJ_RS03835 are separated by 5 nucleotidesMMJJ_RS03835 and MMJJ_RS03840 are separated by 9 nucleotidesMMJJ_RS03840 and MMJJ_RS03845 are separated by 134 nucleotides MMJJ_RS03830: MMJJ_RS03830 - CBS domain-containing protein, at 712,670 to 713,464 _RS03830 MMJJ_RS03835: MMJJ_RS03835 - DUF504 domain-containing protein, at 713,470 to 713,700 _RS03835 MMJJ_RS03840: MMJJ_RS03840 - DHH family phosphoesterase, at 713,710 to 715,170 _RS03840 MMJJ_RS03845: MMJJ_RS03845 - translation initiation factor IF-2, at 715,305 to 717,101 _RS03845 Position (kb) 713 714 715 716Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 712.741 kb on - strandat 712.745 kb on + strandat 712.811 kb on - strand, within MMJJ_RS03830at 712.893 kb on - strand, within MMJJ_RS03830at 712.919 kb on + strand, within MMJJ_RS03830at 712.949 kb on - strand, within MMJJ_RS03830at 712.950 kb on + strand, within MMJJ_RS03830at 712.957 kb on + strand, within MMJJ_RS03830at 713.006 kb on - strand, within MMJJ_RS03830at 713.006 kb on - strand, within MMJJ_RS03830at 713.007 kb on + strand, within MMJJ_RS03830at 713.024 kb on + strand, within MMJJ_RS03830at 713.038 kb on - strand, within MMJJ_RS03830at 713.039 kb on + strand, within MMJJ_RS03830at 713.039 kb on + strand, within MMJJ_RS03830at 713.039 kb on + strand, within MMJJ_RS03830at 713.043 kb on + strand, within MMJJ_RS03830at 713.065 kb on + strand, within MMJJ_RS03830at 713.124 kb on + strand, within MMJJ_RS03830at 713.124 kb on + strand, within MMJJ_RS03830at 713.124 kb on + strand, within MMJJ_RS03830at 713.124 kb on + strand, within MMJJ_RS03830at 713.124 kb on + strand, within MMJJ_RS03830at 713.197 kb on - strand, within MMJJ_RS03830at 713.198 kb on + strand, within MMJJ_RS03830at 713.222 kb on - strand, within MMJJ_RS03830at 713.242 kb on - strand, within MMJJ_RS03830at 713.280 kb on + strand, within MMJJ_RS03830at 713.299 kb on - strand, within MMJJ_RS03830at 713.306 kb on + strand, within MMJJ_RS03830at 713.391 kb on + strandat 713.446 kb on + strandat 713.459 kb on - strandat 713.460 kb on + strandat 713.506 kb on + strand, within MMJJ_RS03835at 713.580 kb on - strand, within MMJJ_RS03835at 713.630 kb on - strand, within MMJJ_RS03835at 713.631 kb on + strand, within MMJJ_RS03835at 713.640 kb on - strand, within MMJJ_RS03835at 713.643 kb on + strand, within MMJJ_RS03835at 713.643 kb on + strand, within MMJJ_RS03835at 713.656 kb on + strand, within MMJJ_RS03835at 713.686 kb on + strandat 713.686 kb on + strandat 713.701 kb on - strandat 713.701 kb on - strandat 713.701 kb on - strandat 713.702 kb on + strandat 713.711 kb on - strandat 713.966 kb on - strand, within MMJJ_RS03840at 714.027 kb on - strand, within MMJJ_RS03840at 714.248 kb on - strand, within MMJJ_RS03840at 714.517 kb on - strand, within MMJJ_RS03840at 714.517 kb on - strand, within MMJJ_RS03840at 714.545 kb on - strand, within MMJJ_RS03840at 714.546 kb on + strand, within MMJJ_RS03840at 714.658 kb on - strand, within MMJJ_RS03840at 714.662 kb on + strand, within MMJJ_RS03840at 714.710 kb on - strand, within MMJJ_RS03840at 714.832 kb on - strand, within MMJJ_RS03840at 714.833 kb on + strand, within MMJJ_RS03840at 714.834 kb on - strandat 714.840 kb on - strandat 714.844 kb on - strand, within MMJJ_RS03840at 714.881 kb on + strandat 714.897 kb on - strandat 714.899 kb on - strand, within MMJJ_RS03840at 715.036 kb on - strandat 715.040 kb on - strandat 715.041 kb on + strandat 715.091 kb on + strandat 715.157 kb on + strandat 715.202 kb on - strandat 715.202 kb on - strandat 715.229 kb on - strandat 715.260 kb on - strandat 715.260 kb on - strandat 715.261 kb on + strandat 715.261 kb on + strandat 715.262 kb on - strandat 715.262 kb on - strandat 715.262 kb on - strandat 715.263 kb on + strandat 715.263 kb on + strandat 715.263 kb on + strandat 715.306 kb on - strandat 715.307 kb on + strandat 715.354 kb on - strandat 715.355 kb on + strandat 715.449 kb on - strandat 715.485 kb on + strand, within MMJJ_RS03845at 715.784 kb on - strand, within MMJJ_RS03845at 715.812 kb on + strand, within MMJJ_RS03845at 716.015 kb on - strand, within MMJJ_RS03845at 716.016 kb on + strand, within MMJJ_RS03845at 716.016 kb on + strand, within MMJJ_RS03845at 716.141 kb on - strand, within MMJJ_RS03845at 716.141 kb on - strand, within MMJJ_RS03845at 716.166 kb on - strand, within MMJJ_RS03845at 716.167 kb on + strand, within MMJJ_RS03845at 716.167 kb on + strand, within MMJJ_RS03845

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM Ammonium chloride
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712,741 - -0.3
712,745 + -1.1
712,811 - MMJJ_RS03830 0.18 -2.3
712,893 - MMJJ_RS03830 0.28 -2.1
712,919 + MMJJ_RS03830 0.31 -4.4
712,949 - MMJJ_RS03830 0.35 -3.5
712,950 + MMJJ_RS03830 0.35 -2.0
712,957 + MMJJ_RS03830 0.36 -1.7
713,006 - MMJJ_RS03830 0.42 -1.5
713,006 - MMJJ_RS03830 0.42 -0.8
713,007 + MMJJ_RS03830 0.42 -2.0
713,024 + MMJJ_RS03830 0.45 -1.0
713,038 - MMJJ_RS03830 0.46 -2.2
713,039 + MMJJ_RS03830 0.46 -3.7
713,039 + MMJJ_RS03830 0.46 -4.8
713,039 + MMJJ_RS03830 0.46 -2.5
713,043 + MMJJ_RS03830 0.47 -2.0
713,065 + MMJJ_RS03830 0.50 -3.4
713,124 + MMJJ_RS03830 0.57 -3.3
713,124 + MMJJ_RS03830 0.57 -1.8
713,124 + MMJJ_RS03830 0.57 -2.1
713,124 + MMJJ_RS03830 0.57 -3.5
713,124 + MMJJ_RS03830 0.57 -1.5
713,197 - MMJJ_RS03830 0.66 -3.2
713,198 + MMJJ_RS03830 0.66 -3.5
713,222 - MMJJ_RS03830 0.69 -3.2
713,242 - MMJJ_RS03830 0.72 -2.0
713,280 + MMJJ_RS03830 0.77 -2.8
713,299 - MMJJ_RS03830 0.79 -4.1
713,306 + MMJJ_RS03830 0.80 -2.5
713,391 + -1.4
713,446 + -1.2
713,459 - -2.4
713,460 + -3.6
713,506 + MMJJ_RS03835 0.16 +0.0
713,580 - MMJJ_RS03835 0.48 -1.9
713,630 - MMJJ_RS03835 0.69 -1.1
713,631 + MMJJ_RS03835 0.70 -1.2
713,640 - MMJJ_RS03835 0.74 -0.1
713,643 + MMJJ_RS03835 0.75 -0.5
713,643 + MMJJ_RS03835 0.75 -0.5
713,656 + MMJJ_RS03835 0.81 +0.7
713,686 + +0.5
713,686 + -0.8
713,701 - -0.7
713,701 - -0.8
713,701 - +0.4
713,702 + +1.0
713,711 - -0.6
713,966 - MMJJ_RS03840 0.18 -1.5
714,027 - MMJJ_RS03840 0.22 -3.0
714,248 - MMJJ_RS03840 0.37 -1.5
714,517 - MMJJ_RS03840 0.55 -2.8
714,517 - MMJJ_RS03840 0.55 -2.3
714,545 - MMJJ_RS03840 0.57 -2.1
714,546 + MMJJ_RS03840 0.57 -2.8
714,658 - MMJJ_RS03840 0.65 -2.0
714,662 + MMJJ_RS03840 0.65 -2.4
714,710 - MMJJ_RS03840 0.68 -0.5
714,832 - MMJJ_RS03840 0.77 -1.3
714,833 + MMJJ_RS03840 0.77 -2.1
714,834 - -1.3
714,840 - +0.0
714,844 - MMJJ_RS03840 0.78 -1.3
714,881 + -1.5
714,897 - -1.3
714,899 - MMJJ_RS03840 0.81 -2.5
715,036 - -0.3
715,040 - -2.3
715,041 + -1.4
715,091 + -1.0
715,157 + -3.2
715,202 - -2.2
715,202 - -2.4
715,229 - -3.7
715,260 - -3.1
715,260 - -2.1
715,261 + -1.3
715,261 + -1.0
715,262 - +0.3
715,262 - -1.3
715,262 - +1.0
715,263 + +0.2
715,263 + -0.5
715,263 + -0.2
715,306 - -0.1
715,307 + +0.4
715,354 - -1.6
715,355 + -3.9
715,449 - -2.3
715,485 + MMJJ_RS03845 0.10 -1.5
715,784 - MMJJ_RS03845 0.27 -1.5
715,812 + MMJJ_RS03845 0.28 -2.4
716,015 - MMJJ_RS03845 0.40 -2.4
716,016 + MMJJ_RS03845 0.40 -3.0
716,016 + MMJJ_RS03845 0.40 -1.3
716,141 - MMJJ_RS03845 0.47 -1.0
716,141 - MMJJ_RS03845 0.47 -1.5
716,166 - MMJJ_RS03845 0.48 -3.0
716,167 + MMJJ_RS03845 0.48 +0.0
716,167 + MMJJ_RS03845 0.48 -2.0

Or see this region's nucleotide sequence