Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00570

Experiment: H2 N-free with 10mM Ammonium chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00565 and MMJJ_RS00570 are separated by 272 nucleotidesMMJJ_RS00570 and MMJJ_RS00575 are separated by 88 nucleotidesMMJJ_RS00575 and MMJJ_RS00580 are separated by 22 nucleotides MMJJ_RS00565: MMJJ_RS00565 - serine--tRNA ligase, at 105,104 to 106,648 _RS00565 MMJJ_RS00570: MMJJ_RS00570 - ribonuclease P, at 106,921 to 107,313 _RS00570 MMJJ_RS00575: MMJJ_RS00575 - carboxylating nicotinate-nucleotide diphosphorylase, at 107,402 to 108,241 _RS00575 MMJJ_RS00580: MMJJ_RS00580 - 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG, at 108,264 to 109,322 _RS00580 Position (kb) 106 107 108Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 106.647 kb on + strandat 106.661 kb on - strandat 106.661 kb on - strandat 106.661 kb on - strandat 106.662 kb on + strandat 106.664 kb on - strandat 106.686 kb on - strandat 106.697 kb on - strandat 106.739 kb on + strandat 106.744 kb on + strandat 106.745 kb on - strandat 106.745 kb on - strandat 106.750 kb on - strandat 106.751 kb on + strandat 106.751 kb on + strandat 106.762 kb on - strandat 106.762 kb on - strandat 106.762 kb on - strandat 106.762 kb on - strandat 106.766 kb on - strandat 106.766 kb on - strandat 106.784 kb on - strandat 106.784 kb on - strandat 106.784 kb on - strandat 106.784 kb on - strandat 106.785 kb on + strandat 106.785 kb on + strandat 106.802 kb on - strandat 106.803 kb on + strandat 106.803 kb on + strandat 106.803 kb on + strandat 106.803 kb on + strandat 106.810 kb on + strandat 106.814 kb on + strandat 106.834 kb on - strandat 106.837 kb on - strandat 106.837 kb on - strandat 106.846 kb on + strandat 106.900 kb on - strandat 106.905 kb on - strandat 106.905 kb on - strandat 106.906 kb on + strandat 106.922 kb on - strandat 106.923 kb on + strandat 107.034 kb on - strand, within MMJJ_RS00570at 107.035 kb on + strand, within MMJJ_RS00570at 107.038 kb on - strand, within MMJJ_RS00570at 107.316 kb on - strandat 107.316 kb on - strandat 107.329 kb on - strandat 107.329 kb on - strandat 107.330 kb on + strandat 107.330 kb on + strandat 107.331 kb on - strandat 107.331 kb on - strandat 107.332 kb on + strandat 107.332 kb on + strandat 107.337 kb on + strandat 107.347 kb on - strandat 107.359 kb on - strandat 107.359 kb on - strandat 107.359 kb on - strandat 107.368 kb on - strandat 107.369 kb on + strandat 107.369 kb on + strandat 107.382 kb on + strandat 107.383 kb on - strandat 107.454 kb on - strandat 108.022 kb on + strandat 108.054 kb on - strand, within MMJJ_RS00575at 108.066 kb on - strand, within MMJJ_RS00575at 108.142 kb on - strand, within MMJJ_RS00575at 108.179 kb on + strandat 108.239 kb on - strandat 108.264 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM Ammonium chloride
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106,647 + -0.6
106,661 - +0.9
106,661 - +1.7
106,661 - +0.9
106,662 + -1.3
106,664 - -1.0
106,686 - +2.4
106,697 - +0.6
106,739 + -0.2
106,744 + +1.0
106,745 - -0.3
106,745 - +0.7
106,750 - +0.4
106,751 + +0.5
106,751 + -1.2
106,762 - +0.4
106,762 - +1.0
106,762 - +0.2
106,762 - -0.3
106,766 - +0.6
106,766 - +1.2
106,784 - +1.0
106,784 - +1.6
106,784 - -1.2
106,784 - +0.5
106,785 + +0.4
106,785 + -0.4
106,802 - -1.0
106,803 + +1.0
106,803 + +0.7
106,803 + +0.2
106,803 + -0.2
106,810 + -0.7
106,814 + -0.5
106,834 - +0.5
106,837 - -0.5
106,837 - +0.8
106,846 + -0.3
106,900 - +0.1
106,905 - +0.6
106,905 - -2.5
106,906 + -1.3
106,922 - +0.8
106,923 + +0.5
107,034 - MMJJ_RS00570 0.29 -3.0
107,035 + MMJJ_RS00570 0.29 -1.6
107,038 - MMJJ_RS00570 0.30 -3.1
107,316 - -2.2
107,316 - -2.2
107,329 - -0.1
107,329 - +1.1
107,330 + +1.0
107,330 + +1.1
107,331 - -1.5
107,331 - -1.1
107,332 + +0.4
107,332 + -3.4
107,337 + +0.3
107,347 - +0.6
107,359 - -0.6
107,359 - -1.5
107,359 - -3.6
107,368 - +0.7
107,369 + -0.9
107,369 + -0.9
107,382 + +0.1
107,383 - -1.6
107,454 - -3.8
108,022 + -1.5
108,054 - MMJJ_RS00575 0.78 +0.1
108,066 - MMJJ_RS00575 0.79 -2.9
108,142 - MMJJ_RS00575 0.88 -1.1
108,179 + -1.2
108,239 - -0.1
108,264 + -2.1

Or see this region's nucleotide sequence