Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06575 and H281DRAFT_06576 overlap by 8 nucleotides H281DRAFT_06576 and H281DRAFT_06577 overlap by 30 nucleotides H281DRAFT_06577 and H281DRAFT_06578 are separated by 174 nucleotides H281DRAFT_06578 and H281DRAFT_06579 are separated by 99 nucleotides
H281DRAFT_06575: H281DRAFT_06575 - PAS domain S-box-containing protein, at 16,607 to 18,796
_06575
H281DRAFT_06576: H281DRAFT_06576 - CheY chemotaxis protein or a CheY-like REC (receiver) domain, at 18,789 to 19,160
_06576
H281DRAFT_06577: H281DRAFT_06577 - hypothetical protein, at 19,131 to 19,541
_06577
H281DRAFT_06578: H281DRAFT_06578 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 19,716 to 20,573
_06578
H281DRAFT_06579: H281DRAFT_06579 - Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase), at 20,673 to 21,695
_06579
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 18.788 kb on + strand at 18.789 kb on - strand at 18.933 kb on - strand, within H281DRAFT_06576 at 19.044 kb on + strand, within H281DRAFT_06576 at 19.045 kb on - strand, within H281DRAFT_06576 at 19.045 kb on - strand, within H281DRAFT_06576 at 19.117 kb on + strand at 19.145 kb on + strand at 19.145 kb on + strand at 19.146 kb on - strand at 19.159 kb on - strand at 19.339 kb on + strand, within H281DRAFT_06577 at 19.340 kb on - strand, within H281DRAFT_06577 at 19.340 kb on - strand, within H281DRAFT_06577 at 19.436 kb on - strand, within H281DRAFT_06577 at 19.436 kb on - strand, within H281DRAFT_06577 at 19.483 kb on + strand, within H281DRAFT_06577 at 19.483 kb on + strand, within H281DRAFT_06577 at 19.483 kb on + strand, within H281DRAFT_06577 at 19.484 kb on - strand, within H281DRAFT_06577 at 19.484 kb on - strand, within H281DRAFT_06577 at 19.484 kb on - strand, within H281DRAFT_06577 at 19.542 kb on - strand at 19.638 kb on - strand at 19.721 kb on + strand at 19.721 kb on + strand at 19.722 kb on - strand at 19.758 kb on - strand at 19.983 kb on - strand, within H281DRAFT_06578 at 20.046 kb on + strand, within H281DRAFT_06578 at 20.046 kb on + strand, within H281DRAFT_06578 at 20.047 kb on - strand at 20.297 kb on + strand, within H281DRAFT_06578 at 20.298 kb on - strand, within H281DRAFT_06578 at 20.338 kb on - strand, within H281DRAFT_06578 at 20.511 kb on + strand at 20.511 kb on + strand at 20.512 kb on - strand at 20.512 kb on - strand at 20.512 kb on - strand at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.938 kb on - strand, within H281DRAFT_06579 at 21.040 kb on - strand, within H281DRAFT_06579 at 21.108 kb on + strand, within H281DRAFT_06579 at 21.109 kb on - strand, within H281DRAFT_06579 at 21.109 kb on - strand, within H281DRAFT_06579 at 21.450 kb on + strand, within H281DRAFT_06579 at 21.451 kb on - strand, within H281DRAFT_06579 at 21.528 kb on + strand, within H281DRAFT_06579
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 18,788 + -0.6 18,789 - +0.5 18,933 - H281DRAFT_06576 0.39 -0.2 19,044 + H281DRAFT_06576 0.69 +0.1 19,045 - H281DRAFT_06576 0.69 +0.8 19,045 - H281DRAFT_06576 0.69 +0.6 19,117 + +1.0 19,145 + -0.7 19,145 + -1.0 19,146 - -0.4 19,159 - +1.6 19,339 + H281DRAFT_06577 0.51 -0.3 19,340 - H281DRAFT_06577 0.51 -1.0 19,340 - H281DRAFT_06577 0.51 +0.2 19,436 - H281DRAFT_06577 0.74 +0.8 19,436 - H281DRAFT_06577 0.74 +2.0 19,483 + H281DRAFT_06577 0.86 -0.7 19,483 + H281DRAFT_06577 0.86 -1.5 19,483 + H281DRAFT_06577 0.86 -1.6 19,484 - H281DRAFT_06577 0.86 -0.1 19,484 - H281DRAFT_06577 0.86 +0.6 19,484 - H281DRAFT_06577 0.86 -0.4 19,542 - +1.1 19,638 - +0.4 19,721 + +0.1 19,721 + +0.8 19,722 - +1.0 19,758 - +1.0 19,983 - H281DRAFT_06578 0.31 +0.2 20,046 + H281DRAFT_06578 0.38 +0.7 20,046 + H281DRAFT_06578 0.38 -1.0 20,047 - +4.7 20,297 + H281DRAFT_06578 0.68 +0.6 20,298 - H281DRAFT_06578 0.68 -2.9 20,338 - H281DRAFT_06578 0.72 -0.7 20,511 + +1.5 20,511 + +0.5 20,512 - -0.5 20,512 - -0.3 20,512 - -0.1 20,937 + H281DRAFT_06579 0.26 -0.1 20,937 + H281DRAFT_06579 0.26 +0.5 20,937 + H281DRAFT_06579 0.26 +0.6 20,937 + H281DRAFT_06579 0.26 -0.2 20,937 + H281DRAFT_06579 0.26 -0.6 20,937 + H281DRAFT_06579 0.26 +1.4 20,937 + H281DRAFT_06579 0.26 -0.3 20,938 - H281DRAFT_06579 0.26 -0.2 21,040 - H281DRAFT_06579 0.36 +0.2 21,108 + H281DRAFT_06579 0.43 +0.3 21,109 - H281DRAFT_06579 0.43 -0.5 21,109 - H281DRAFT_06579 0.43 +0.7 21,450 + H281DRAFT_06579 0.76 +0.0 21,451 - H281DRAFT_06579 0.76 +0.1 21,528 + H281DRAFT_06579 0.84 +0.3
Or see this region's nucleotide sequence