Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06515 and H281DRAFT_06516 overlap by 4 nucleotides H281DRAFT_06516 and H281DRAFT_06517 are separated by 248 nucleotides
H281DRAFT_06515: H281DRAFT_06515 - uncharacterized domain 1-containing protein, at 64,599 to 65,054
_06515
H281DRAFT_06516: H281DRAFT_06516 - transcriptional regulator, TetR family, at 65,051 to 65,644
_06516
H281DRAFT_06517: H281DRAFT_06517 - DNA-binding transcriptional regulator, LysR family, at 65,893 to 66,837
_06517
Position (kb) 65
66 Strain fitness (log2 ratio) -1
0
1
2 at 64.176 kb on + strand at 64.176 kb on + strand at 64.262 kb on - strand at 64.360 kb on + strand at 64.361 kb on - strand at 64.369 kb on + strand at 64.486 kb on - strand at 64.486 kb on - strand at 64.646 kb on - strand, within H281DRAFT_06515 at 64.647 kb on + strand, within H281DRAFT_06515 at 64.750 kb on - strand, within H281DRAFT_06515 at 64.788 kb on - strand, within H281DRAFT_06515 at 64.790 kb on - strand, within H281DRAFT_06515 at 64.888 kb on + strand, within H281DRAFT_06515 at 64.889 kb on - strand, within H281DRAFT_06515 at 64.889 kb on - strand, within H281DRAFT_06515 at 65.035 kb on - strand at 65.109 kb on - strand at 65.679 kb on - strand at 65.901 kb on + strand at 66.234 kb on + strand, within H281DRAFT_06517 at 66.444 kb on - strand at 66.444 kb on - strand, within H281DRAFT_06517
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 64,176 + +0.1 64,176 + -0.3 64,262 - +1.4 64,360 + +0.7 64,361 - +0.2 64,369 + +0.3 64,486 - +0.3 64,486 - +1.7 64,646 - H281DRAFT_06515 0.10 +0.6 64,647 + H281DRAFT_06515 0.11 -1.1 64,750 - H281DRAFT_06515 0.33 -0.3 64,788 - H281DRAFT_06515 0.41 +0.1 64,790 - H281DRAFT_06515 0.42 -0.7 64,888 + H281DRAFT_06515 0.63 +2.0 64,889 - H281DRAFT_06515 0.64 +0.0 64,889 - H281DRAFT_06515 0.64 +1.0 65,035 - -0.5 65,109 - +0.5 65,679 - -0.7 65,901 + +0.6 66,234 + H281DRAFT_06517 0.36 -0.5 66,444 - +0.7 66,444 - H281DRAFT_06517 0.58 -0.3
Or see this region's nucleotide sequence