Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06474 and H281DRAFT_06475 are separated by 4 nucleotides H281DRAFT_06475 and H281DRAFT_06476 are separated by 78 nucleotides H281DRAFT_06476 and H281DRAFT_06477 are separated by 54 nucleotides
H281DRAFT_06474: H281DRAFT_06474 - amino acid ABC transporter membrane protein 1, PAAT family, at 11,333 to 12,022
_06474
H281DRAFT_06475: H281DRAFT_06475 - amino acid ABC transporter membrane protein 2, PAAT family, at 12,027 to 12,740
_06475
H281DRAFT_06476: H281DRAFT_06476 - amino acid ABC transporter ATP-binding protein, PAAT family, at 12,819 to 13,610
_06476
H281DRAFT_06477: H281DRAFT_06477 - transcriptional regulator, AraC family, at 13,665 to 14,684
_06477
Position (kb) 12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 12.241 kb on - strand, within H281DRAFT_06475 at 12.274 kb on - strand at 12.274 kb on - strand, within H281DRAFT_06475 at 12.274 kb on - strand, within H281DRAFT_06475 at 12.372 kb on + strand, within H281DRAFT_06475 at 12.373 kb on - strand, within H281DRAFT_06475 at 12.442 kb on - strand, within H281DRAFT_06475 at 12.446 kb on + strand, within H281DRAFT_06475 at 12.514 kb on - strand, within H281DRAFT_06475 at 12.518 kb on + strand at 12.615 kb on + strand, within H281DRAFT_06475 at 12.654 kb on + strand, within H281DRAFT_06475 at 13.625 kb on + strand at 14.410 kb on - strand, within H281DRAFT_06477 at 14.433 kb on + strand, within H281DRAFT_06477
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 12,241 - H281DRAFT_06475 0.30 -2.9 12,274 - -1.9 12,274 - H281DRAFT_06475 0.35 -0.9 12,274 - H281DRAFT_06475 0.35 -0.5 12,372 + H281DRAFT_06475 0.48 -0.4 12,373 - H281DRAFT_06475 0.48 -0.2 12,442 - H281DRAFT_06475 0.58 +0.3 12,446 + H281DRAFT_06475 0.59 +0.2 12,514 - H281DRAFT_06475 0.68 +0.3 12,518 + -0.3 12,615 + H281DRAFT_06475 0.82 +1.2 12,654 + H281DRAFT_06475 0.88 +1.5 13,625 + +0.1 14,410 - H281DRAFT_06477 0.73 -1.3 14,433 + H281DRAFT_06477 0.75 +0.5
Or see this region's nucleotide sequence