Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06457 and H281DRAFT_06458 are separated by 207 nucleotides H281DRAFT_06458 and H281DRAFT_06459 overlap by 4 nucleotides H281DRAFT_06459 and H281DRAFT_06460 overlap by 8 nucleotides
H281DRAFT_06457: H281DRAFT_06457 - hypothetical protein, at 66,244 to 66,456
_06457
H281DRAFT_06458: H281DRAFT_06458 - hypothetical protein, at 66,664 to 67,173
_06458
H281DRAFT_06459: H281DRAFT_06459 - flagellar motor switch protein FliG, at 67,170 to 68,165
_06459
H281DRAFT_06460: H281DRAFT_06460 - diguanylate phosphodiesterase, at 68,158 to 69,726
_06460
Position (kb) 66
67
68 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 65.688 kb on + strand at 65.734 kb on + strand at 65.806 kb on - strand at 65.806 kb on - strand at 65.806 kb on - strand at 65.928 kb on - strand at 65.953 kb on + strand at 66.154 kb on - strand at 66.212 kb on + strand at 66.371 kb on + strand, within H281DRAFT_06457 at 66.371 kb on + strand, within H281DRAFT_06457 at 66.371 kb on + strand, within H281DRAFT_06457 at 66.371 kb on + strand, within H281DRAFT_06457 at 66.371 kb on + strand, within H281DRAFT_06457 at 66.371 kb on + strand, within H281DRAFT_06457 at 66.372 kb on - strand, within H281DRAFT_06457 at 66.372 kb on - strand, within H281DRAFT_06457 at 66.404 kb on + strand, within H281DRAFT_06457 at 66.441 kb on + strand at 66.442 kb on - strand at 66.484 kb on + strand at 66.485 kb on - strand at 66.485 kb on - strand at 66.622 kb on + strand at 66.623 kb on - strand at 66.742 kb on + strand, within H281DRAFT_06458 at 67.006 kb on + strand, within H281DRAFT_06458 at 67.008 kb on + strand, within H281DRAFT_06458 at 67.008 kb on + strand, within H281DRAFT_06458 at 67.008 kb on + strand, within H281DRAFT_06458 at 67.008 kb on + strand, within H281DRAFT_06458 at 67.009 kb on - strand, within H281DRAFT_06458 at 67.009 kb on - strand, within H281DRAFT_06458 at 67.009 kb on - strand, within H281DRAFT_06458 at 67.009 kb on - strand, within H281DRAFT_06458 at 67.551 kb on - strand, within H281DRAFT_06459 at 67.887 kb on - strand, within H281DRAFT_06459 at 68.090 kb on + strand at 68.098 kb on + strand at 68.128 kb on + strand at 68.155 kb on + strand at 68.155 kb on + strand at 68.155 kb on + strand at 68.155 kb on + strand at 68.155 kb on + strand at 68.155 kb on + strand at 68.155 kb on + strand at 68.156 kb on - strand at 68.156 kb on - strand at 68.156 kb on - strand at 68.156 kb on - strand at 68.156 kb on - strand at 68.157 kb on + strand at 68.158 kb on - strand at 68.158 kb on - strand at 68.158 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 65,688 + -1.0 65,734 + +0.9 65,806 - -1.0 65,806 - +2.4 65,806 - +0.5 65,928 - -3.8 65,953 + -0.1 66,154 - -0.4 66,212 + +0.1 66,371 + H281DRAFT_06457 0.60 +1.0 66,371 + H281DRAFT_06457 0.60 +0.2 66,371 + H281DRAFT_06457 0.60 +0.7 66,371 + H281DRAFT_06457 0.60 -1.5 66,371 + H281DRAFT_06457 0.60 +1.4 66,371 + H281DRAFT_06457 0.60 +0.1 66,372 - H281DRAFT_06457 0.60 +0.8 66,372 - H281DRAFT_06457 0.60 -1.0 66,404 + H281DRAFT_06457 0.75 -0.1 66,441 + +0.7 66,442 - -0.6 66,484 + -2.7 66,485 - -0.2 66,485 - -0.0 66,622 + -2.7 66,623 - +0.6 66,742 + H281DRAFT_06458 0.15 +0.4 67,006 + H281DRAFT_06458 0.67 -2.2 67,008 + H281DRAFT_06458 0.67 +0.5 67,008 + H281DRAFT_06458 0.67 -0.4 67,008 + H281DRAFT_06458 0.67 +0.2 67,008 + H281DRAFT_06458 0.67 -0.3 67,009 - H281DRAFT_06458 0.68 -1.2 67,009 - H281DRAFT_06458 0.68 +0.7 67,009 - H281DRAFT_06458 0.68 -1.8 67,009 - H281DRAFT_06458 0.68 +0.1 67,551 - H281DRAFT_06459 0.38 +0.5 67,887 - H281DRAFT_06459 0.72 -2.3 68,090 + +0.3 68,098 + -0.1 68,128 + +2.6 68,155 + -0.1 68,155 + +0.9 68,155 + +1.2 68,155 + -0.2 68,155 + +0.1 68,155 + +0.6 68,155 + +0.1 68,156 - -0.8 68,156 - +0.5 68,156 - -2.6 68,156 - -1.8 68,156 - -1.0 68,157 + -0.8 68,158 - +1.0 68,158 - -2.5 68,158 - -0.0
Or see this region's nucleotide sequence