Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06394 and H281DRAFT_06395 overlap by 4 nucleotides H281DRAFT_06395 and H281DRAFT_06396 overlap by 4 nucleotides H281DRAFT_06396 and H281DRAFT_06397 overlap by 4 nucleotides H281DRAFT_06397 and H281DRAFT_06398 are separated by 120 nucleotides
H281DRAFT_06394: H281DRAFT_06394 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 65,615 to 66,316
_06394
H281DRAFT_06395: H281DRAFT_06395 - amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 66,313 to 67,080
_06395
H281DRAFT_06396: H281DRAFT_06396 - amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-), at 67,077 to 68,141
_06396
H281DRAFT_06397: H281DRAFT_06397 - amino acid/amide ABC transporter membrane protein 1, HAAT family, at 68,138 to 68,998
_06397
H281DRAFT_06398: H281DRAFT_06398 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 69,119 to 70,327
_06398
Position (kb) 67
68
69 Strain fitness (log2 ratio) -2
-1
0
1
2 at 67.003 kb on + strand, within H281DRAFT_06395 at 67.189 kb on + strand, within H281DRAFT_06396 at 67.273 kb on + strand, within H281DRAFT_06396 at 67.273 kb on + strand, within H281DRAFT_06396 at 67.530 kb on + strand, within H281DRAFT_06396 at 67.531 kb on - strand, within H281DRAFT_06396 at 67.718 kb on - strand, within H281DRAFT_06396 at 67.757 kb on - strand, within H281DRAFT_06396 at 67.757 kb on - strand, within H281DRAFT_06396 at 67.883 kb on - strand at 67.975 kb on - strand, within H281DRAFT_06396 at 68.133 kb on - strand at 68.343 kb on - strand, within H281DRAFT_06397 at 68.870 kb on - strand, within H281DRAFT_06397 at 68.871 kb on + strand, within H281DRAFT_06397 at 68.946 kb on + strand at 68.988 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 67,003 + H281DRAFT_06395 0.90 +1.6 67,189 + H281DRAFT_06396 0.11 +0.1 67,273 + H281DRAFT_06396 0.18 -0.2 67,273 + H281DRAFT_06396 0.18 +1.9 67,530 + H281DRAFT_06396 0.43 -0.3 67,531 - H281DRAFT_06396 0.43 -0.5 67,718 - H281DRAFT_06396 0.60 -0.8 67,757 - H281DRAFT_06396 0.64 -1.5 67,757 - H281DRAFT_06396 0.64 +0.0 67,883 - +0.9 67,975 - H281DRAFT_06396 0.84 +0.0 68,133 - -0.4 68,343 - H281DRAFT_06397 0.24 +0.1 68,870 - H281DRAFT_06397 0.85 -2.0 68,871 + H281DRAFT_06397 0.85 -0.1 68,946 + +0.1 68,988 + -0.1
Or see this region's nucleotide sequence