Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06383 and H281DRAFT_06384 are separated by 24 nucleotides H281DRAFT_06384 and H281DRAFT_06385 overlap by 4 nucleotides H281DRAFT_06385 and H281DRAFT_06386 are separated by 82 nucleotides
H281DRAFT_06383: H281DRAFT_06383 - tRNA 2-selenouridine synthase, at 55,591 to 56,658
_06383
H281DRAFT_06384: H281DRAFT_06384 - hypothetical protein, at 56,683 to 57,741
_06384
H281DRAFT_06385: H281DRAFT_06385 - hypothetical protein, at 57,738 to 57,872
_06385
H281DRAFT_06386: H281DRAFT_06386 - Sugar phosphate permease, at 57,955 to 59,259
_06386
Position (kb) 56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 55.744 kb on + strand, within H281DRAFT_06383 at 55.745 kb on - strand, within H281DRAFT_06383 at 55.745 kb on - strand, within H281DRAFT_06383 at 55.864 kb on + strand, within H281DRAFT_06383 at 55.865 kb on - strand, within H281DRAFT_06383 at 55.976 kb on + strand, within H281DRAFT_06383 at 55.977 kb on - strand, within H281DRAFT_06383 at 56.011 kb on + strand, within H281DRAFT_06383 at 56.357 kb on - strand, within H281DRAFT_06383 at 56.422 kb on - strand, within H281DRAFT_06383 at 56.507 kb on - strand, within H281DRAFT_06383 at 56.518 kb on + strand, within H281DRAFT_06383 at 56.611 kb on - strand at 56.634 kb on + strand at 56.635 kb on - strand at 56.761 kb on + strand at 56.762 kb on - strand at 56.762 kb on - strand at 56.782 kb on + strand at 56.841 kb on + strand, within H281DRAFT_06384 at 56.841 kb on + strand, within H281DRAFT_06384 at 57.247 kb on + strand, within H281DRAFT_06384 at 57.394 kb on + strand, within H281DRAFT_06384 at 57.394 kb on + strand, within H281DRAFT_06384 at 57.394 kb on + strand, within H281DRAFT_06384 at 57.793 kb on - strand, within H281DRAFT_06385 at 57.962 kb on - strand at 58.050 kb on + strand at 58.050 kb on + strand at 58.051 kb on - strand at 58.077 kb on + strand at 58.078 kb on - strand at 58.078 kb on - strand at 58.217 kb on + strand, within H281DRAFT_06386 at 58.218 kb on - strand, within H281DRAFT_06386 at 58.475 kb on + strand, within H281DRAFT_06386 at 58.487 kb on + strand at 58.511 kb on + strand, within H281DRAFT_06386 at 58.511 kb on + strand, within H281DRAFT_06386 at 58.512 kb on - strand, within H281DRAFT_06386 at 58.512 kb on - strand, within H281DRAFT_06386
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 55,744 + H281DRAFT_06383 0.14 -1.0 55,745 - H281DRAFT_06383 0.14 -0.3 55,745 - H281DRAFT_06383 0.14 -3.5 55,864 + H281DRAFT_06383 0.26 +2.2 55,865 - H281DRAFT_06383 0.26 +1.9 55,976 + H281DRAFT_06383 0.36 -0.0 55,977 - H281DRAFT_06383 0.36 -0.1 56,011 + H281DRAFT_06383 0.39 -0.4 56,357 - H281DRAFT_06383 0.72 -0.5 56,422 - H281DRAFT_06383 0.78 +0.9 56,507 - H281DRAFT_06383 0.86 -0.7 56,518 + H281DRAFT_06383 0.87 +0.9 56,611 - +0.1 56,634 + +1.6 56,635 - -0.3 56,761 + +1.1 56,762 - -0.2 56,762 - -0.2 56,782 + -1.1 56,841 + H281DRAFT_06384 0.15 -0.3 56,841 + H281DRAFT_06384 0.15 +0.2 57,247 + H281DRAFT_06384 0.53 -1.7 57,394 + H281DRAFT_06384 0.67 -3.2 57,394 + H281DRAFT_06384 0.67 -0.6 57,394 + H281DRAFT_06384 0.67 -0.6 57,793 - H281DRAFT_06385 0.41 +0.0 57,962 - +0.0 58,050 + +0.2 58,050 + -0.4 58,051 - +1.5 58,077 + -0.4 58,078 - +1.7 58,078 - -0.4 58,217 + H281DRAFT_06386 0.20 -0.7 58,218 - H281DRAFT_06386 0.20 +1.1 58,475 + H281DRAFT_06386 0.40 +0.1 58,487 + -0.1 58,511 + H281DRAFT_06386 0.43 -0.3 58,511 + H281DRAFT_06386 0.43 +1.0 58,512 - H281DRAFT_06386 0.43 +1.0 58,512 - H281DRAFT_06386 0.43 -1.0
Or see this region's nucleotide sequence