Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06340 and H281DRAFT_06341 are separated by 6 nucleotides H281DRAFT_06341 and H281DRAFT_06342 are separated by 185 nucleotides
H281DRAFT_06340: H281DRAFT_06340 - Predicted N-acetyltransferase YhbS, at 14,398 to 15,264
_06340
H281DRAFT_06341: H281DRAFT_06341 - glyoxylate/hydroxypyruvate reductase A, at 15,271 to 16,197
_06341
H281DRAFT_06342: H281DRAFT_06342 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 16,383 to 17,804
_06342
Position (kb) 15
16
17 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 14.416 kb on + strand at 14.416 kb on + strand at 14.416 kb on + strand at 14.416 kb on + strand at 14.579 kb on - strand, within H281DRAFT_06340 at 15.236 kb on - strand at 15.283 kb on + strand at 15.284 kb on - strand at 15.286 kb on - strand at 15.347 kb on + strand at 15.562 kb on + strand, within H281DRAFT_06341 at 15.773 kb on + strand, within H281DRAFT_06341 at 15.773 kb on + strand, within H281DRAFT_06341 at 15.774 kb on - strand, within H281DRAFT_06341 at 15.791 kb on - strand, within H281DRAFT_06341 at 16.183 kb on - strand at 16.193 kb on - strand at 16.196 kb on - strand at 16.196 kb on - strand at 16.338 kb on + strand at 16.621 kb on - strand, within H281DRAFT_06342 at 16.632 kb on + strand at 16.633 kb on - strand, within H281DRAFT_06342 at 16.633 kb on - strand, within H281DRAFT_06342 at 16.633 kb on - strand, within H281DRAFT_06342 at 16.633 kb on - strand, within H281DRAFT_06342 at 16.936 kb on - strand, within H281DRAFT_06342
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 14,416 + -1.5 14,416 + -2.0 14,416 + +3.2 14,416 + -0.2 14,579 - H281DRAFT_06340 0.21 -0.3 15,236 - +0.2 15,283 + -1.9 15,284 - +1.6 15,286 - -0.1 15,347 + +0.1 15,562 + H281DRAFT_06341 0.31 -0.5 15,773 + H281DRAFT_06341 0.54 -0.6 15,773 + H281DRAFT_06341 0.54 -2.7 15,774 - H281DRAFT_06341 0.54 -1.4 15,791 - H281DRAFT_06341 0.56 -1.1 16,183 - +1.3 16,193 - +1.2 16,196 - +1.0 16,196 - -0.7 16,338 + +0.9 16,621 - H281DRAFT_06342 0.17 -0.6 16,632 + +1.9 16,633 - H281DRAFT_06342 0.18 +0.9 16,633 - H281DRAFT_06342 0.18 +0.1 16,633 - H281DRAFT_06342 0.18 +0.7 16,633 - H281DRAFT_06342 0.18 +0.2 16,936 - H281DRAFT_06342 0.39 +0.2
Or see this region's nucleotide sequence