Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06080 and H281DRAFT_06081 are separated by 59 nucleotides H281DRAFT_06081 and H281DRAFT_06082 are separated by 53 nucleotides
H281DRAFT_06080: H281DRAFT_06080 - thioredoxin reductase (NADPH), at 96,856 to 98,091
_06080
H281DRAFT_06081: H281DRAFT_06081 - ubiquitin-hydrolase Zn-finger-containing protein, at 98,151 to 98,423
_06081
H281DRAFT_06082: H281DRAFT_06082 - ATP-dependent Clp protease ATP-binding subunit ClpC, at 98,477 to 101,311
_06082
Position (kb) 98
99 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 97.162 kb on + strand, within H281DRAFT_06080 at 97.163 kb on + strand, within H281DRAFT_06080 at 97.163 kb on - strand, within H281DRAFT_06080 at 97.190 kb on + strand, within H281DRAFT_06080 at 97.190 kb on + strand at 97.191 kb on - strand, within H281DRAFT_06080 at 97.193 kb on + strand, within H281DRAFT_06080 at 97.193 kb on + strand, within H281DRAFT_06080 at 97.386 kb on - strand, within H281DRAFT_06080 at 97.386 kb on - strand, within H281DRAFT_06080 at 97.408 kb on - strand, within H281DRAFT_06080 at 97.408 kb on - strand, within H281DRAFT_06080 at 97.426 kb on - strand, within H281DRAFT_06080 at 97.498 kb on + strand, within H281DRAFT_06080 at 97.501 kb on + strand, within H281DRAFT_06080 at 97.547 kb on + strand, within H281DRAFT_06080 at 97.547 kb on + strand, within H281DRAFT_06080 at 97.547 kb on + strand, within H281DRAFT_06080 at 97.548 kb on - strand, within H281DRAFT_06080 at 97.549 kb on + strand, within H281DRAFT_06080 at 97.549 kb on + strand, within H281DRAFT_06080 at 97.549 kb on + strand, within H281DRAFT_06080 at 97.549 kb on + strand, within H281DRAFT_06080 at 97.549 kb on + strand, within H281DRAFT_06080 at 97.549 kb on + strand, within H281DRAFT_06080 at 97.619 kb on - strand, within H281DRAFT_06080 at 97.619 kb on - strand, within H281DRAFT_06080 at 97.699 kb on + strand, within H281DRAFT_06080 at 97.704 kb on - strand, within H281DRAFT_06080 at 97.886 kb on - strand, within H281DRAFT_06080 at 97.886 kb on - strand, within H281DRAFT_06080 at 97.971 kb on + strand at 97.972 kb on - strand at 97.972 kb on - strand at 97.972 kb on - strand at 97.972 kb on - strand at 98.082 kb on + strand at 98.128 kb on + strand at 98.128 kb on + strand at 98.144 kb on + strand at 98.145 kb on - strand at 98.245 kb on + strand, within H281DRAFT_06081 at 98.252 kb on - strand, within H281DRAFT_06081 at 99.188 kb on + strand, within H281DRAFT_06082 at 99.189 kb on - strand, within H281DRAFT_06082
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 97,162 + H281DRAFT_06080 0.25 -1.3 97,163 + H281DRAFT_06080 0.25 -0.3 97,163 - H281DRAFT_06080 0.25 -0.2 97,190 + H281DRAFT_06080 0.27 -0.4 97,190 + +3.1 97,191 - H281DRAFT_06080 0.27 -0.1 97,193 + H281DRAFT_06080 0.27 -0.6 97,193 + H281DRAFT_06080 0.27 -0.2 97,386 - H281DRAFT_06080 0.43 -0.4 97,386 - H281DRAFT_06080 0.43 -0.5 97,408 - H281DRAFT_06080 0.45 +1.0 97,408 - H281DRAFT_06080 0.45 -0.9 97,426 - H281DRAFT_06080 0.46 +0.4 97,498 + H281DRAFT_06080 0.52 -0.5 97,501 + H281DRAFT_06080 0.52 +0.7 97,547 + H281DRAFT_06080 0.56 +0.3 97,547 + H281DRAFT_06080 0.56 +0.3 97,547 + H281DRAFT_06080 0.56 -2.6 97,548 - H281DRAFT_06080 0.56 -0.6 97,549 + H281DRAFT_06080 0.56 +0.3 97,549 + H281DRAFT_06080 0.56 -0.5 97,549 + H281DRAFT_06080 0.56 -0.1 97,549 + H281DRAFT_06080 0.56 +0.3 97,549 + H281DRAFT_06080 0.56 -0.3 97,549 + H281DRAFT_06080 0.56 -0.1 97,619 - H281DRAFT_06080 0.62 +0.1 97,619 - H281DRAFT_06080 0.62 +0.2 97,699 + H281DRAFT_06080 0.68 +0.8 97,704 - H281DRAFT_06080 0.69 -0.8 97,886 - H281DRAFT_06080 0.83 -0.3 97,886 - H281DRAFT_06080 0.83 -0.5 97,971 + -0.3 97,972 - +0.6 97,972 - -2.6 97,972 - -0.8 97,972 - -0.0 98,082 + +0.8 98,128 + +0.4 98,128 + +0.1 98,144 + +0.6 98,145 - +1.1 98,245 + H281DRAFT_06081 0.34 -0.8 98,252 - H281DRAFT_06081 0.37 -0.8 99,188 + H281DRAFT_06082 0.25 -0.9 99,189 - H281DRAFT_06082 0.25 -0.9
Or see this region's nucleotide sequence