Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06077 and H281DRAFT_06078 are separated by 243 nucleotides H281DRAFT_06078 and H281DRAFT_06079 are separated by 113 nucleotides H281DRAFT_06079 and H281DRAFT_06080 are separated by 292 nucleotides
H281DRAFT_06077: H281DRAFT_06077 - transcriptional regulator, LysR family, at 94,363 to 95,328
_06077
H281DRAFT_06078: H281DRAFT_06078 - protein of unknown function (DUF4148), at 95,572 to 95,883
_06078
H281DRAFT_06079: H281DRAFT_06079 - Uncharacterized membrane protein, DUF373 family, at 95,997 to 96,563
_06079
H281DRAFT_06080: H281DRAFT_06080 - thioredoxin reductase (NADPH), at 96,856 to 98,091
_06080
Position (kb) 95
96 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 94.653 kb on + strand, within H281DRAFT_06077 at 94.678 kb on + strand, within H281DRAFT_06077 at 94.678 kb on + strand, within H281DRAFT_06077 at 94.678 kb on + strand, within H281DRAFT_06077 at 94.678 kb on + strand, within H281DRAFT_06077 at 94.679 kb on - strand, within H281DRAFT_06077 at 94.679 kb on - strand, within H281DRAFT_06077 at 94.702 kb on + strand, within H281DRAFT_06077 at 94.703 kb on - strand, within H281DRAFT_06077 at 94.856 kb on + strand, within H281DRAFT_06077 at 94.877 kb on - strand, within H281DRAFT_06077 at 95.129 kb on + strand, within H281DRAFT_06077 at 95.146 kb on + strand, within H281DRAFT_06077 at 95.338 kb on - strand at 95.338 kb on - strand at 95.341 kb on + strand at 95.341 kb on + strand at 95.341 kb on + strand at 95.341 kb on + strand at 95.342 kb on - strand at 95.342 kb on - strand at 95.342 kb on - strand at 95.342 kb on - strand at 95.342 kb on - strand at 95.499 kb on - strand at 95.502 kb on + strand at 95.503 kb on - strand at 95.539 kb on + strand at 95.564 kb on - strand at 95.567 kb on + strand at 95.567 kb on + strand at 95.568 kb on - strand at 95.568 kb on - strand at 95.669 kb on + strand, within H281DRAFT_06078 at 95.811 kb on - strand, within H281DRAFT_06078 at 95.869 kb on + strand at 95.870 kb on - strand at 95.889 kb on + strand at 96.201 kb on - strand, within H281DRAFT_06079 at 96.203 kb on + strand, within H281DRAFT_06079 at 96.203 kb on + strand, within H281DRAFT_06079 at 96.241 kb on - strand, within H281DRAFT_06079 at 96.349 kb on + strand, within H281DRAFT_06079 at 96.349 kb on + strand, within H281DRAFT_06079 at 96.537 kb on - strand at 96.630 kb on + strand at 96.705 kb on - strand at 96.774 kb on + strand at 96.775 kb on - strand at 96.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 94,653 + H281DRAFT_06077 0.30 -2.1 94,678 + H281DRAFT_06077 0.33 -0.4 94,678 + H281DRAFT_06077 0.33 +0.3 94,678 + H281DRAFT_06077 0.33 +1.3 94,678 + H281DRAFT_06077 0.33 -1.2 94,679 - H281DRAFT_06077 0.33 -0.4 94,679 - H281DRAFT_06077 0.33 -0.0 94,702 + H281DRAFT_06077 0.35 -0.7 94,703 - H281DRAFT_06077 0.35 -0.3 94,856 + H281DRAFT_06077 0.51 +0.4 94,877 - H281DRAFT_06077 0.53 +0.2 95,129 + H281DRAFT_06077 0.79 -0.6 95,146 + H281DRAFT_06077 0.81 -0.4 95,338 - -0.6 95,338 - +0.5 95,341 + +0.7 95,341 + +1.8 95,341 + -0.2 95,341 + -0.3 95,342 - +0.5 95,342 - +0.0 95,342 - +0.5 95,342 - -1.2 95,342 - -0.0 95,499 - +0.7 95,502 + +0.5 95,503 - -0.6 95,539 + -0.5 95,564 - +0.1 95,567 + +0.4 95,567 + -0.4 95,568 - -0.7 95,568 - +0.9 95,669 + H281DRAFT_06078 0.31 -1.4 95,811 - H281DRAFT_06078 0.77 -0.1 95,869 + -0.3 95,870 - +0.2 95,889 + -0.4 96,201 - H281DRAFT_06079 0.36 -0.6 96,203 + H281DRAFT_06079 0.36 +0.5 96,203 + H281DRAFT_06079 0.36 +1.1 96,241 - H281DRAFT_06079 0.43 -1.2 96,349 + H281DRAFT_06079 0.62 -1.0 96,349 + H281DRAFT_06079 0.62 -2.8 96,537 - -0.9 96,630 + +0.4 96,705 - -0.0 96,774 + -0.7 96,775 - +0.4 96,775 - +1.4
Or see this region's nucleotide sequence