Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05790 and H281DRAFT_05791 overlap by 1 nucleotides H281DRAFT_05791 and H281DRAFT_05792 are separated by 35 nucleotides H281DRAFT_05792 and H281DRAFT_05793 are separated by 125 nucleotides
H281DRAFT_05790: H281DRAFT_05790 - hook-length control protein FliK, at 62,643 to 64,112
_05790
H281DRAFT_05791: H281DRAFT_05791 - flagellar biosynthesis protein, at 64,112 to 64,471
_05791
H281DRAFT_05792: H281DRAFT_05792 - coniferyl-aldehyde dehydrogenase, at 64,507 to 65,925
_05792
H281DRAFT_05793: H281DRAFT_05793 - putative acyl-CoA dehydrogenase, at 66,051 to 67,736
_05793
Position (kb) 64
65
66 Strain fitness (log2 ratio) -1
0
1
2
3 at 63.998 kb on + strand at 63.998 kb on + strand at 63.998 kb on + strand at 64.152 kb on - strand, within H281DRAFT_05791 at 64.250 kb on + strand, within H281DRAFT_05791 at 64.250 kb on + strand, within H281DRAFT_05791 at 64.251 kb on - strand, within H281DRAFT_05791 at 64.325 kb on + strand, within H281DRAFT_05791 at 64.325 kb on + strand, within H281DRAFT_05791 at 64.326 kb on - strand at 64.326 kb on - strand, within H281DRAFT_05791 at 64.470 kb on - strand at 64.553 kb on + strand at 64.553 kb on + strand at 64.553 kb on + strand at 64.637 kb on + strand at 64.647 kb on - strand at 64.785 kb on - strand, within H281DRAFT_05792 at 64.790 kb on + strand, within H281DRAFT_05792 at 64.790 kb on + strand, within H281DRAFT_05792 at 64.790 kb on + strand, within H281DRAFT_05792 at 65.087 kb on + strand, within H281DRAFT_05792 at 65.088 kb on - strand, within H281DRAFT_05792 at 65.157 kb on - strand, within H281DRAFT_05792 at 65.408 kb on - strand, within H281DRAFT_05792 at 65.408 kb on - strand, within H281DRAFT_05792 at 65.556 kb on - strand, within H281DRAFT_05792 at 65.556 kb on - strand, within H281DRAFT_05792 at 65.571 kb on + strand, within H281DRAFT_05792 at 65.572 kb on - strand, within H281DRAFT_05792 at 66.113 kb on - strand at 66.309 kb on + strand, within H281DRAFT_05793 at 66.310 kb on - strand, within H281DRAFT_05793 at 66.522 kb on - strand, within H281DRAFT_05793 at 66.823 kb on + strand, within H281DRAFT_05793
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 63,998 + +1.1 63,998 + -0.1 63,998 + +0.8 64,152 - H281DRAFT_05791 0.11 +0.9 64,250 + H281DRAFT_05791 0.38 -1.4 64,250 + H281DRAFT_05791 0.38 -0.2 64,251 - H281DRAFT_05791 0.39 -0.5 64,325 + H281DRAFT_05791 0.59 -0.5 64,325 + H281DRAFT_05791 0.59 -0.5 64,326 - +2.8 64,326 - H281DRAFT_05791 0.59 +0.1 64,470 - +0.8 64,553 + +0.3 64,553 + +0.7 64,553 + +2.8 64,637 + +0.8 64,647 - +0.6 64,785 - H281DRAFT_05792 0.20 -0.8 64,790 + H281DRAFT_05792 0.20 -0.3 64,790 + H281DRAFT_05792 0.20 -0.3 64,790 + H281DRAFT_05792 0.20 -1.5 65,087 + H281DRAFT_05792 0.41 -0.7 65,088 - H281DRAFT_05792 0.41 +1.3 65,157 - H281DRAFT_05792 0.46 -0.2 65,408 - H281DRAFT_05792 0.63 -0.5 65,408 - H281DRAFT_05792 0.63 +2.2 65,556 - H281DRAFT_05792 0.74 +0.0 65,556 - H281DRAFT_05792 0.74 +0.4 65,571 + H281DRAFT_05792 0.75 +0.0 65,572 - H281DRAFT_05792 0.75 +1.2 66,113 - -1.4 66,309 + H281DRAFT_05793 0.15 +0.5 66,310 - H281DRAFT_05793 0.15 -0.7 66,522 - H281DRAFT_05793 0.28 -0.3 66,823 + H281DRAFT_05793 0.46 +0.4
Or see this region's nucleotide sequence