Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05710 and H281DRAFT_05711 are separated by 97 nucleotides H281DRAFT_05711 and H281DRAFT_05712 are separated by 42 nucleotides H281DRAFT_05712 and H281DRAFT_05713 are separated by 30 nucleotides
H281DRAFT_05710: H281DRAFT_05710 - Uracil-DNA glycosylase, at 129,530 to 130,372
_05710
H281DRAFT_05711: H281DRAFT_05711 - adenylate cyclase, at 130,470 to 131,096
_05711
H281DRAFT_05712: H281DRAFT_05712 - indole-3-glycerol phosphate synthase, at 131,139 to 131,936
_05712
H281DRAFT_05713: H281DRAFT_05713 - anthranilate phosphoribosyltransferase, at 131,967 to 132,998
_05713
Position (kb) 131
132 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 130.295 kb on - strand at 130.295 kb on - strand at 130.433 kb on - strand at 130.614 kb on - strand, within H281DRAFT_05711 at 130.708 kb on - strand at 130.919 kb on + strand, within H281DRAFT_05711 at 130.920 kb on - strand, within H281DRAFT_05711 at 130.979 kb on - strand, within H281DRAFT_05711 at 130.982 kb on + strand, within H281DRAFT_05711 at 131.121 kb on - strand at 131.121 kb on - strand at 131.121 kb on - strand at 131.121 kb on - strand at 131.514 kb on + strand, within H281DRAFT_05712 at 131.515 kb on - strand, within H281DRAFT_05712 at 131.557 kb on + strand, within H281DRAFT_05712 at 131.558 kb on - strand, within H281DRAFT_05712 at 131.623 kb on + strand, within H281DRAFT_05712 at 131.624 kb on - strand, within H281DRAFT_05712 at 131.693 kb on - strand, within H281DRAFT_05712 at 131.915 kb on + strand at 131.936 kb on + strand at 131.936 kb on + strand at 131.937 kb on - strand at 131.968 kb on + strand at 131.969 kb on - strand at 131.969 kb on - strand at 132.327 kb on - strand, within H281DRAFT_05713 at 132.331 kb on + strand, within H281DRAFT_05713 at 132.331 kb on + strand at 132.331 kb on + strand, within H281DRAFT_05713 at 132.331 kb on + strand at 132.332 kb on - strand, within H281DRAFT_05713 at 132.332 kb on - strand, within H281DRAFT_05713 at 132.332 kb on - strand, within H281DRAFT_05713 at 132.716 kb on + strand, within H281DRAFT_05713 at 132.716 kb on + strand, within H281DRAFT_05713 at 132.716 kb on + strand, within H281DRAFT_05713 at 132.726 kb on - strand, within H281DRAFT_05713 at 132.867 kb on - strand, within H281DRAFT_05713
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 130,295 - -0.3 130,295 - -0.4 130,433 - +0.2 130,614 - H281DRAFT_05711 0.23 +1.0 130,708 - -0.8 130,919 + H281DRAFT_05711 0.72 +0.5 130,920 - H281DRAFT_05711 0.72 +0.2 130,979 - H281DRAFT_05711 0.81 +0.7 130,982 + H281DRAFT_05711 0.82 +0.7 131,121 - +1.0 131,121 - +0.5 131,121 - -0.8 131,121 - +1.2 131,514 + H281DRAFT_05712 0.47 -2.4 131,515 - H281DRAFT_05712 0.47 -4.3 131,557 + H281DRAFT_05712 0.52 -0.8 131,558 - H281DRAFT_05712 0.53 -2.0 131,623 + H281DRAFT_05712 0.61 -4.8 131,624 - H281DRAFT_05712 0.61 -1.6 131,693 - H281DRAFT_05712 0.69 -2.8 131,915 + -3.2 131,936 + -1.3 131,936 + -2.1 131,937 - -1.5 131,968 + -0.9 131,969 - -1.0 131,969 - +2.0 132,327 - H281DRAFT_05713 0.35 -2.5 132,331 + H281DRAFT_05713 0.35 -2.3 132,331 + -0.4 132,331 + H281DRAFT_05713 0.35 -1.0 132,331 + +1.2 132,332 - H281DRAFT_05713 0.35 -4.6 132,332 - H281DRAFT_05713 0.35 -3.3 132,332 - H281DRAFT_05713 0.35 -2.6 132,716 + H281DRAFT_05713 0.73 -1.8 132,716 + H281DRAFT_05713 0.73 -3.5 132,716 + H281DRAFT_05713 0.73 -4.4 132,726 - H281DRAFT_05713 0.74 -2.3 132,867 - H281DRAFT_05713 0.87 -1.1
Or see this region's nucleotide sequence