Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05409 and H281DRAFT_05410 are separated by 46 nucleotides H281DRAFT_05410 and H281DRAFT_05411 are separated by 413 nucleotides
H281DRAFT_05409: H281DRAFT_05409 - transcriptional regulator, LysR family, at 172,944 to 173,837
_05409
H281DRAFT_05410: H281DRAFT_05410 - Ca2+:H+ antiporter, at 173,884 to 174,966
_05410
H281DRAFT_05411: H281DRAFT_05411 - Predicted periplasmic or secreted lipoprotein, at 175,380 to 175,745
_05411
Position (kb) 173
174
175 Strain fitness (log2 ratio) -2
-1
0
1 at 172.897 kb on - strand at 173.079 kb on + strand, within H281DRAFT_05409 at 173.079 kb on + strand, within H281DRAFT_05409 at 173.079 kb on + strand, within H281DRAFT_05409 at 173.080 kb on - strand, within H281DRAFT_05409 at 173.080 kb on - strand, within H281DRAFT_05409 at 173.082 kb on + strand, within H281DRAFT_05409 at 173.374 kb on - strand, within H281DRAFT_05409 at 173.498 kb on + strand, within H281DRAFT_05409 at 173.754 kb on + strand at 173.754 kb on + strand at 173.835 kb on + strand at 173.835 kb on + strand at 173.835 kb on + strand at 173.835 kb on + strand at 173.835 kb on + strand at 173.836 kb on - strand at 173.909 kb on + strand at 173.910 kb on - strand at 174.212 kb on - strand, within H281DRAFT_05410 at 174.389 kb on + strand, within H281DRAFT_05410 at 174.764 kb on - strand, within H281DRAFT_05410 at 174.853 kb on + strand, within H281DRAFT_05410 at 174.853 kb on + strand, within H281DRAFT_05410 at 174.854 kb on - strand, within H281DRAFT_05410 at 174.887 kb on + strand at 174.986 kb on + strand at 175.040 kb on + strand at 175.081 kb on + strand at 175.091 kb on + strand at 175.269 kb on - strand at 175.290 kb on - strand at 175.769 kb on - strand at 175.769 kb on - strand at 175.804 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 172,897 - +0.9 173,079 + H281DRAFT_05409 0.15 -1.1 173,079 + H281DRAFT_05409 0.15 -0.6 173,079 + H281DRAFT_05409 0.15 -0.1 173,080 - H281DRAFT_05409 0.15 -0.0 173,080 - H281DRAFT_05409 0.15 -0.5 173,082 + H281DRAFT_05409 0.15 +0.0 173,374 - H281DRAFT_05409 0.48 +1.4 173,498 + H281DRAFT_05409 0.62 +0.3 173,754 + -1.1 173,754 + +0.6 173,835 + +0.2 173,835 + -0.4 173,835 + -0.7 173,835 + +0.3 173,835 + -2.1 173,836 - +0.7 173,909 + +1.7 173,910 - +0.1 174,212 - H281DRAFT_05410 0.30 -0.1 174,389 + H281DRAFT_05410 0.47 +1.2 174,764 - H281DRAFT_05410 0.81 +0.2 174,853 + H281DRAFT_05410 0.89 -1.1 174,853 + H281DRAFT_05410 0.89 +0.4 174,854 - H281DRAFT_05410 0.90 +0.5 174,887 + -0.7 174,986 + +0.5 175,040 + -0.4 175,081 + -0.1 175,091 + +1.1 175,269 - -1.1 175,290 - +0.8 175,769 - -0.1 175,769 - +1.0 175,804 - +0.8
Or see this region's nucleotide sequence