Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05401 and H281DRAFT_05402 are separated by 94 nucleotides H281DRAFT_05402 and H281DRAFT_05403 are separated by 2 nucleotides H281DRAFT_05403 and H281DRAFT_05404 are separated by 40 nucleotides H281DRAFT_05404 and H281DRAFT_05405 are separated by 53 nucleotides
H281DRAFT_05401: H281DRAFT_05401 - Cytochrome c, mono- and diheme variants, at 164,590 to 165,885
_05401
H281DRAFT_05402: H281DRAFT_05402 - amino acid ABC transporter membrane protein 2, PAAT family, at 165,980 to 166,636
_05402
H281DRAFT_05403: H281DRAFT_05403 - amino acid ABC transporter membrane protein 1, PAAT family, at 166,639 to 167,385
_05403
H281DRAFT_05404: H281DRAFT_05404 - amino acid ABC transporter substrate-binding protein, PAAT family, at 167,426 to 168,262
_05404
H281DRAFT_05405: H281DRAFT_05405 - putative spermidine/putrescine transport system ATP-binding protein, at 168,316 to 169,392
_05405
Position (kb) 166
167
168 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 165.752 kb on - strand, within H281DRAFT_05401 at 165.816 kb on + strand at 165.890 kb on - strand at 166.057 kb on - strand, within H281DRAFT_05402 at 166.077 kb on + strand, within H281DRAFT_05402 at 166.237 kb on + strand, within H281DRAFT_05402 at 166.238 kb on - strand, within H281DRAFT_05402 at 166.239 kb on + strand, within H281DRAFT_05402 at 166.239 kb on + strand, within H281DRAFT_05402 at 166.239 kb on + strand, within H281DRAFT_05402 at 166.339 kb on - strand, within H281DRAFT_05402 at 166.470 kb on + strand, within H281DRAFT_05402 at 166.470 kb on + strand, within H281DRAFT_05402 at 166.815 kb on - strand, within H281DRAFT_05403 at 166.863 kb on - strand, within H281DRAFT_05403 at 167.076 kb on - strand, within H281DRAFT_05403 at 167.116 kb on + strand, within H281DRAFT_05403 at 167.208 kb on - strand, within H281DRAFT_05403 at 167.378 kb on + strand at 167.378 kb on + strand at 167.379 kb on - strand at 167.379 kb on - strand at 167.379 kb on - strand at 167.661 kb on - strand, within H281DRAFT_05404 at 167.850 kb on + strand, within H281DRAFT_05404 at 168.031 kb on - strand, within H281DRAFT_05404 at 168.247 kb on + strand at 168.305 kb on + strand at 168.314 kb on + strand at 168.315 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 165,752 - H281DRAFT_05401 0.90 +1.3 165,816 + +0.3 165,890 - +0.7 166,057 - H281DRAFT_05402 0.12 +0.2 166,077 + H281DRAFT_05402 0.15 -1.3 166,237 + H281DRAFT_05402 0.39 +0.4 166,238 - H281DRAFT_05402 0.39 +0.4 166,239 + H281DRAFT_05402 0.39 +0.6 166,239 + H281DRAFT_05402 0.39 -0.2 166,239 + H281DRAFT_05402 0.39 -0.6 166,339 - H281DRAFT_05402 0.55 -0.5 166,470 + H281DRAFT_05402 0.75 +0.9 166,470 + H281DRAFT_05402 0.75 -0.0 166,815 - H281DRAFT_05403 0.24 -0.1 166,863 - H281DRAFT_05403 0.30 +0.1 167,076 - H281DRAFT_05403 0.59 +1.2 167,116 + H281DRAFT_05403 0.64 +4.0 167,208 - H281DRAFT_05403 0.76 +1.0 167,378 + -1.0 167,378 + -1.7 167,379 - +0.1 167,379 - +0.2 167,379 - +0.5 167,661 - H281DRAFT_05404 0.28 +0.0 167,850 + H281DRAFT_05404 0.51 -0.1 168,031 - H281DRAFT_05404 0.72 -0.3 168,247 + +1.0 168,305 + +1.0 168,314 + +0.3 168,315 - -0.1
Or see this region's nucleotide sequence