Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05355 and H281DRAFT_05356 are separated by 153 nucleotides H281DRAFT_05356 and H281DRAFT_05357 are separated by 193 nucleotides H281DRAFT_05357 and H281DRAFT_05358 are separated by 409 nucleotides
H281DRAFT_05355: H281DRAFT_05355 - Peptidase_C39 like family protein, at 108,255 to 108,887
_05355
H281DRAFT_05356: H281DRAFT_05356 - hypothetical protein, at 109,041 to 109,304
_05356
H281DRAFT_05357: H281DRAFT_05357 - ornithine cyclodeaminase, at 109,498 to 110,433
_05357
H281DRAFT_05358: H281DRAFT_05358 - glucose-6-phosphate 1-dehydrogenase, at 110,843 to 112,324
_05358
Position (kb) 109
110
111 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 108.557 kb on + strand, within H281DRAFT_05355 at 108.557 kb on + strand, within H281DRAFT_05355 at 108.558 kb on - strand, within H281DRAFT_05355 at 108.558 kb on - strand, within H281DRAFT_05355 at 108.558 kb on - strand, within H281DRAFT_05355 at 108.558 kb on - strand, within H281DRAFT_05355 at 108.562 kb on - strand, within H281DRAFT_05355 at 108.816 kb on + strand, within H281DRAFT_05355 at 108.816 kb on + strand, within H281DRAFT_05355 at 108.816 kb on + strand, within H281DRAFT_05355 at 108.846 kb on + strand at 108.846 kb on + strand at 108.869 kb on + strand at 108.870 kb on - strand at 109.040 kb on + strand at 109.094 kb on + strand, within H281DRAFT_05356 at 109.178 kb on + strand, within H281DRAFT_05356 at 109.179 kb on - strand, within H281DRAFT_05356 at 109.410 kb on + strand at 109.411 kb on - strand at 109.460 kb on + strand at 109.555 kb on + strand at 109.751 kb on + strand, within H281DRAFT_05357 at 109.752 kb on - strand, within H281DRAFT_05357 at 109.752 kb on - strand, within H281DRAFT_05357 at 109.952 kb on - strand, within H281DRAFT_05357 at 110.123 kb on - strand, within H281DRAFT_05357 at 110.497 kb on + strand at 110.529 kb on - strand at 110.532 kb on + strand at 110.533 kb on - strand at 110.609 kb on + strand at 110.610 kb on - strand at 110.666 kb on + strand at 110.842 kb on + strand at 110.945 kb on + strand at 110.945 kb on + strand at 110.945 kb on + strand at 110.945 kb on + strand at 110.945 kb on + strand at 110.946 kb on - strand at 110.946 kb on - strand at 110.946 kb on - strand at 111.026 kb on + strand, within H281DRAFT_05358 at 111.123 kb on - strand, within H281DRAFT_05358 at 111.155 kb on + strand, within H281DRAFT_05358 at 111.156 kb on - strand, within H281DRAFT_05358 at 111.203 kb on + strand, within H281DRAFT_05358 at 111.204 kb on - strand, within H281DRAFT_05358 at 111.204 kb on - strand, within H281DRAFT_05358 at 111.204 kb on - strand, within H281DRAFT_05358 at 111.204 kb on - strand, within H281DRAFT_05358 at 111.267 kb on + strand, within H281DRAFT_05358 at 111.389 kb on + strand, within H281DRAFT_05358
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 108,557 + H281DRAFT_05355 0.48 -0.0 108,557 + H281DRAFT_05355 0.48 +0.2 108,558 - H281DRAFT_05355 0.48 -2.4 108,558 - H281DRAFT_05355 0.48 +0.9 108,558 - H281DRAFT_05355 0.48 -0.0 108,558 - H281DRAFT_05355 0.48 -0.6 108,562 - H281DRAFT_05355 0.48 -0.9 108,816 + H281DRAFT_05355 0.89 -2.1 108,816 + H281DRAFT_05355 0.89 +1.1 108,816 + H281DRAFT_05355 0.89 +3.0 108,846 + -0.9 108,846 + +0.4 108,869 + +0.5 108,870 - +0.0 109,040 + +1.9 109,094 + H281DRAFT_05356 0.20 +0.3 109,178 + H281DRAFT_05356 0.52 +1.0 109,179 - H281DRAFT_05356 0.52 +1.3 109,410 + +0.2 109,411 - -1.0 109,460 + -0.6 109,555 + +0.2 109,751 + H281DRAFT_05357 0.27 +0.5 109,752 - H281DRAFT_05357 0.27 -0.1 109,752 - H281DRAFT_05357 0.27 -0.5 109,952 - H281DRAFT_05357 0.49 +0.3 110,123 - H281DRAFT_05357 0.67 -0.2 110,497 + -0.6 110,529 - +0.4 110,532 + +0.2 110,533 - +0.5 110,609 + +0.3 110,610 - +0.3 110,666 + -0.9 110,842 + -0.4 110,945 + +0.3 110,945 + -0.3 110,945 + -0.6 110,945 + +1.8 110,945 + -0.5 110,946 - +0.2 110,946 - -0.3 110,946 - +0.1 111,026 + H281DRAFT_05358 0.12 +0.1 111,123 - H281DRAFT_05358 0.19 +0.3 111,155 + H281DRAFT_05358 0.21 -0.8 111,156 - H281DRAFT_05358 0.21 +0.2 111,203 + H281DRAFT_05358 0.24 +0.2 111,204 - H281DRAFT_05358 0.24 -1.0 111,204 - H281DRAFT_05358 0.24 -0.1 111,204 - H281DRAFT_05358 0.24 +0.5 111,204 - H281DRAFT_05358 0.24 -1.1 111,267 + H281DRAFT_05358 0.29 +0.6 111,389 + H281DRAFT_05358 0.37 +0.3
Or see this region's nucleotide sequence