Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05350 and H281DRAFT_05351 are separated by 27 nucleotides H281DRAFT_05351 and H281DRAFT_05352 are separated by 283 nucleotides
H281DRAFT_05350: H281DRAFT_05350 - Signal transduction histidine kinase, at 101,996 to 103,846
_05350
H281DRAFT_05351: H281DRAFT_05351 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 103,874 to 104,728
_05351
H281DRAFT_05352: H281DRAFT_05352 - serine/threonine-protein kinase HipA, at 105,012 to 106,352
_05352
Position (kb) 103
104
105 Strain fitness (log2 ratio) -1
0
1
2 at 103.118 kb on + strand, within H281DRAFT_05350 at 103.180 kb on - strand, within H281DRAFT_05350 at 103.367 kb on - strand, within H281DRAFT_05350 at 103.367 kb on - strand, within H281DRAFT_05350 at 103.519 kb on + strand, within H281DRAFT_05350 at 103.776 kb on + strand at 103.791 kb on - strand at 103.954 kb on - strand at 104.301 kb on + strand, within H281DRAFT_05351 at 104.313 kb on + strand, within H281DRAFT_05351 at 104.526 kb on + strand, within H281DRAFT_05351 at 104.728 kb on + strand at 104.728 kb on + strand at 104.728 kb on + strand at 104.729 kb on - strand at 104.729 kb on - strand at 104.782 kb on - strand at 104.819 kb on - strand at 104.840 kb on - strand at 104.871 kb on - strand at 104.928 kb on - strand at 105.124 kb on - strand at 105.124 kb on - strand at 105.124 kb on - strand at 105.203 kb on + strand, within H281DRAFT_05352 at 105.204 kb on - strand, within H281DRAFT_05352 at 105.204 kb on - strand, within H281DRAFT_05352 at 105.300 kb on - strand at 105.556 kb on + strand, within H281DRAFT_05352 at 105.694 kb on + strand, within H281DRAFT_05352 at 105.695 kb on - strand, within H281DRAFT_05352 at 105.705 kb on + strand, within H281DRAFT_05352
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 103,118 + H281DRAFT_05350 0.61 -1.2 103,180 - H281DRAFT_05350 0.64 -0.6 103,367 - H281DRAFT_05350 0.74 -0.1 103,367 - H281DRAFT_05350 0.74 +0.7 103,519 + H281DRAFT_05350 0.82 +0.8 103,776 + -0.9 103,791 - -0.0 103,954 - -1.4 104,301 + H281DRAFT_05351 0.50 -0.4 104,313 + H281DRAFT_05351 0.51 -0.3 104,526 + H281DRAFT_05351 0.76 -1.7 104,728 + -0.5 104,728 + +1.7 104,728 + +0.1 104,729 - -0.1 104,729 - +0.6 104,782 - +2.0 104,819 - +0.1 104,840 - +0.4 104,871 - -0.4 104,928 - +0.5 105,124 - +0.3 105,124 - +0.4 105,124 - +0.5 105,203 + H281DRAFT_05352 0.14 +0.8 105,204 - H281DRAFT_05352 0.14 +0.5 105,204 - H281DRAFT_05352 0.14 +0.2 105,300 - +2.3 105,556 + H281DRAFT_05352 0.41 +0.1 105,694 + H281DRAFT_05352 0.51 +0.5 105,695 - H281DRAFT_05352 0.51 +0.4 105,705 + H281DRAFT_05352 0.52 -0.7
Or see this region's nucleotide sequence