Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04969 and H281DRAFT_04970 overlap by 4 nucleotides H281DRAFT_04970 and H281DRAFT_04971 are separated by 79 nucleotides H281DRAFT_04971 and H281DRAFT_04972 are separated by 118 nucleotides
H281DRAFT_04969: H281DRAFT_04969 - 4Fe-4S binding domain-containing protein, at 152,112 to 153,518
_04969
H281DRAFT_04970: H281DRAFT_04970 - high-affinity iron transporter, at 153,515 to 154,360
_04970
H281DRAFT_04971: H281DRAFT_04971 - Predicted periplasmic lipoprotein involved in iron transport, at 154,440 to 154,772
_04971
H281DRAFT_04972: H281DRAFT_04972 - hypothetical protein, at 154,891 to 155,439
_04972
Position (kb) 154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 153.512 kb on + strand at 153.577 kb on - strand at 153.591 kb on + strand at 153.856 kb on - strand, within H281DRAFT_04970 at 154.246 kb on - strand, within H281DRAFT_04970 at 154.346 kb on + strand at 154.347 kb on - strand at 154.347 kb on - strand at 154.442 kb on - strand at 154.607 kb on + strand, within H281DRAFT_04971 at 154.608 kb on - strand, within H281DRAFT_04971 at 154.608 kb on - strand, within H281DRAFT_04971 at 154.608 kb on - strand, within H281DRAFT_04971 at 154.626 kb on - strand, within H281DRAFT_04971 at 154.626 kb on - strand, within H281DRAFT_04971 at 154.857 kb on - strand at 154.926 kb on + strand at 154.926 kb on + strand at 154.934 kb on + strand at 155.048 kb on + strand, within H281DRAFT_04972 at 155.048 kb on + strand, within H281DRAFT_04972 at 155.049 kb on - strand, within H281DRAFT_04972 at 155.177 kb on + strand, within H281DRAFT_04972 at 155.178 kb on - strand, within H281DRAFT_04972 at 155.562 kb on - strand at 155.587 kb on + strand at 155.607 kb on + strand at 155.608 kb on - strand at 155.623 kb on + strand at 155.624 kb on - strand at 155.624 kb on - strand at 155.635 kb on - strand at 155.655 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 153,512 + -0.6 153,577 - -0.8 153,591 + +0.2 153,856 - H281DRAFT_04970 0.40 +3.8 154,246 - H281DRAFT_04970 0.86 -1.5 154,346 + -0.6 154,347 - -0.5 154,347 - -0.8 154,442 - +0.5 154,607 + H281DRAFT_04971 0.50 -0.2 154,608 - H281DRAFT_04971 0.50 -0.5 154,608 - H281DRAFT_04971 0.50 -0.1 154,608 - H281DRAFT_04971 0.50 -1.8 154,626 - H281DRAFT_04971 0.56 -1.4 154,626 - H281DRAFT_04971 0.56 +0.6 154,857 - +0.5 154,926 + -0.8 154,926 + -3.0 154,934 + -0.5 155,048 + H281DRAFT_04972 0.29 -0.6 155,048 + H281DRAFT_04972 0.29 +0.5 155,049 - H281DRAFT_04972 0.29 +1.3 155,177 + H281DRAFT_04972 0.52 -1.0 155,178 - H281DRAFT_04972 0.52 -0.9 155,562 - +1.5 155,587 + -0.7 155,607 + -2.3 155,608 - -0.0 155,623 + -0.8 155,624 - -0.1 155,624 - +0.2 155,635 - +0.2 155,655 - -1.2
Or see this region's nucleotide sequence