Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04933 and H281DRAFT_04934 are separated by 256 nucleotides H281DRAFT_04934 and H281DRAFT_04935 are separated by 161 nucleotides H281DRAFT_04935 and H281DRAFT_04936 are separated by 310 nucleotides
H281DRAFT_04933: H281DRAFT_04933 - Nitroreductase, at 115,290 to 115,913
_04933
H281DRAFT_04934: H281DRAFT_04934 - Sensors of blue-light using FAD, at 116,170 to 116,685
_04934
H281DRAFT_04935: H281DRAFT_04935 - D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4), at 116,847 to 118,499
_04935
H281DRAFT_04936: H281DRAFT_04936 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 118,810 to 120,285
_04936
Position (kb) 116
117
118
119 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 115.882 kb on + strand at 116.129 kb on - strand at 116.132 kb on - strand at 116.170 kb on - strand at 116.170 kb on - strand at 116.261 kb on + strand, within H281DRAFT_04934 at 116.498 kb on - strand, within H281DRAFT_04934 at 117.413 kb on - strand, within H281DRAFT_04935 at 118.241 kb on + strand, within H281DRAFT_04935 at 118.289 kb on + strand, within H281DRAFT_04935 at 118.290 kb on - strand, within H281DRAFT_04935 at 118.611 kb on + strand at 118.612 kb on - strand at 119.146 kb on + strand, within H281DRAFT_04936 at 119.146 kb on + strand, within H281DRAFT_04936 at 119.147 kb on - strand, within H281DRAFT_04936 at 119.155 kb on + strand, within H281DRAFT_04936 at 119.192 kb on + strand, within H281DRAFT_04936 at 119.192 kb on + strand, within H281DRAFT_04936
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 115,882 + -1.1 116,129 - -0.0 116,132 - -0.9 116,170 - -1.5 116,170 - +0.1 116,261 + H281DRAFT_04934 0.18 -2.9 116,498 - H281DRAFT_04934 0.64 +0.3 117,413 - H281DRAFT_04935 0.34 -1.2 118,241 + H281DRAFT_04935 0.84 +1.3 118,289 + H281DRAFT_04935 0.87 -2.6 118,290 - H281DRAFT_04935 0.87 +0.3 118,611 + +1.9 118,612 - -0.2 119,146 + H281DRAFT_04936 0.23 -0.5 119,146 + H281DRAFT_04936 0.23 -0.6 119,147 - H281DRAFT_04936 0.23 +1.0 119,155 + H281DRAFT_04936 0.23 -1.5 119,192 + H281DRAFT_04936 0.26 +0.9 119,192 + H281DRAFT_04936 0.26 +0.3
Or see this region's nucleotide sequence