Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04887 and H281DRAFT_04888 overlap by 8 nucleotides H281DRAFT_04888 and H281DRAFT_04889 are separated by 59 nucleotides H281DRAFT_04889 and H281DRAFT_04890 are separated by 76 nucleotides
H281DRAFT_04887: H281DRAFT_04887 - hypothetical protein, at 31,970 to 33,019
_04887
H281DRAFT_04888: H281DRAFT_04888 - protein of unknown function (DUF4118), at 33,012 to 34,415
_04888
H281DRAFT_04889: H281DRAFT_04889 - hypothetical protein, at 34,475 to 35,026
_04889
H281DRAFT_04890: H281DRAFT_04890 - Tetratricopeptide repeat-containing protein, at 35,103 to 38,999
_04890
Position (kb) 33
34
35 Strain fitness (log2 ratio) -2
-1
0
1
2 at 32.317 kb on - strand, within H281DRAFT_04887 at 32.686 kb on - strand, within H281DRAFT_04887 at 33.330 kb on - strand, within H281DRAFT_04888 at 33.420 kb on + strand, within H281DRAFT_04888 at 33.452 kb on - strand, within H281DRAFT_04888 at 33.828 kb on - strand, within H281DRAFT_04888 at 33.941 kb on - strand, within H281DRAFT_04888 at 33.953 kb on + strand, within H281DRAFT_04888 at 33.954 kb on - strand, within H281DRAFT_04888 at 34.023 kb on - strand, within H281DRAFT_04888 at 34.656 kb on + strand, within H281DRAFT_04889 at 34.689 kb on + strand, within H281DRAFT_04889 at 35.070 kb on - strand at 35.250 kb on + strand at 35.302 kb on + strand at 35.303 kb on - strand at 35.352 kb on - strand at 35.353 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 32,317 - H281DRAFT_04887 0.33 -0.4 32,686 - H281DRAFT_04887 0.68 +2.4 33,330 - H281DRAFT_04888 0.23 +1.4 33,420 + H281DRAFT_04888 0.29 -0.6 33,452 - H281DRAFT_04888 0.31 -2.4 33,828 - H281DRAFT_04888 0.58 -0.5 33,941 - H281DRAFT_04888 0.66 -0.3 33,953 + H281DRAFT_04888 0.67 -0.1 33,954 - H281DRAFT_04888 0.67 +1.2 34,023 - H281DRAFT_04888 0.72 +0.5 34,656 + H281DRAFT_04889 0.33 -2.1 34,689 + H281DRAFT_04889 0.39 -0.9 35,070 - +0.4 35,250 + -1.6 35,302 + -1.1 35,303 - -0.8 35,352 - +0.5 35,353 + +0.2
Or see this region's nucleotide sequence