Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04875 and H281DRAFT_04876 are separated by 129 nucleotides H281DRAFT_04876 and H281DRAFT_04877 are separated by 34 nucleotides H281DRAFT_04877 and H281DRAFT_04878 are separated by 91 nucleotides
H281DRAFT_04875: H281DRAFT_04875 - Nucleoside-diphosphate-sugar epimerase, at 19,413 to 20,324
_04875
H281DRAFT_04876: H281DRAFT_04876 - hypothetical protein, at 20,454 to 20,636
_04876
H281DRAFT_04877: H281DRAFT_04877 - Predicted dithiol-disulfide oxidoreductase, DUF899 family, at 20,671 to 21,441
_04877
H281DRAFT_04878: H281DRAFT_04878 - transcriptional regulator, ArsR family, at 21,533 to 21,958
_04878
Position (kb) 20
21 Strain fitness (log2 ratio) -1
0
1 at 19.761 kb on + strand, within H281DRAFT_04875 at 19.762 kb on - strand, within H281DRAFT_04875 at 20.375 kb on - strand at 20.524 kb on - strand, within H281DRAFT_04876 at 20.545 kb on - strand, within H281DRAFT_04876 at 20.715 kb on - strand at 20.835 kb on - strand, within H281DRAFT_04877 at 20.865 kb on + strand, within H281DRAFT_04877 at 20.867 kb on + strand, within H281DRAFT_04877 at 20.922 kb on + strand, within H281DRAFT_04877 at 21.047 kb on - strand, within H281DRAFT_04877 at 21.347 kb on - strand, within H281DRAFT_04877 at 21.475 kb on + strand at 21.480 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 19,761 + H281DRAFT_04875 0.38 -0.6 19,762 - H281DRAFT_04875 0.38 -1.3 20,375 - +0.1 20,524 - H281DRAFT_04876 0.38 +1.1 20,545 - H281DRAFT_04876 0.50 +0.4 20,715 - +0.3 20,835 - H281DRAFT_04877 0.21 -0.0 20,865 + H281DRAFT_04877 0.25 +0.6 20,867 + H281DRAFT_04877 0.25 -0.6 20,922 + H281DRAFT_04877 0.33 +0.0 21,047 - H281DRAFT_04877 0.49 +1.2 21,347 - H281DRAFT_04877 0.88 -1.0 21,475 + -0.2 21,480 - +0.6
Or see this region's nucleotide sequence