Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04839 and H281DRAFT_04840 are separated by 669 nucleotides H281DRAFT_04840 and H281DRAFT_04841 are separated by 820 nucleotides
H281DRAFT_04839: H281DRAFT_04839 - hypothetical protein, at 277,314 to 277,694
_04839
H281DRAFT_04840: H281DRAFT_04840 - Uncharacterized protein conserved in bacteria, at 278,364 to 279,188
_04840
H281DRAFT_04841: H281DRAFT_04841 - Glycosyltransferase involved in cell wall bisynthesis, at 280,009 to 280,956
_04841
Position (kb) 278
279
280 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 277.544 kb on + strand, within H281DRAFT_04839 at 277.545 kb on - strand, within H281DRAFT_04839 at 277.570 kb on + strand, within H281DRAFT_04839 at 277.570 kb on + strand, within H281DRAFT_04839 at 277.570 kb on + strand, within H281DRAFT_04839 at 277.571 kb on - strand, within H281DRAFT_04839 at 277.571 kb on - strand, within H281DRAFT_04839 at 277.571 kb on - strand, within H281DRAFT_04839 at 277.574 kb on + strand, within H281DRAFT_04839 at 277.574 kb on + strand, within H281DRAFT_04839 at 277.574 kb on + strand, within H281DRAFT_04839 at 277.574 kb on + strand, within H281DRAFT_04839 at 277.574 kb on + strand, within H281DRAFT_04839 at 277.574 kb on + strand, within H281DRAFT_04839 at 277.574 kb on + strand, within H281DRAFT_04839 at 277.574 kb on + strand, within H281DRAFT_04839 at 277.574 kb on + strand, within H281DRAFT_04839 at 277.574 kb on + strand at 277.574 kb on + strand, within H281DRAFT_04839 at 277.574 kb on + strand, within H281DRAFT_04839 at 277.574 kb on + strand, within H281DRAFT_04839 at 277.574 kb on + strand, within H281DRAFT_04839 at 277.575 kb on - strand, within H281DRAFT_04839 at 277.575 kb on - strand, within H281DRAFT_04839 at 277.575 kb on - strand, within H281DRAFT_04839 at 277.575 kb on - strand, within H281DRAFT_04839 at 277.575 kb on - strand, within H281DRAFT_04839 at 277.575 kb on - strand, within H281DRAFT_04839 at 277.575 kb on - strand, within H281DRAFT_04839 at 277.575 kb on - strand, within H281DRAFT_04839 at 277.575 kb on - strand, within H281DRAFT_04839 at 277.575 kb on - strand, within H281DRAFT_04839 at 277.575 kb on - strand, within H281DRAFT_04839 at 277.578 kb on + strand, within H281DRAFT_04839 at 277.578 kb on + strand, within H281DRAFT_04839 at 277.578 kb on + strand, within H281DRAFT_04839 at 277.578 kb on + strand, within H281DRAFT_04839 at 277.578 kb on + strand, within H281DRAFT_04839 at 277.578 kb on + strand, within H281DRAFT_04839 at 277.578 kb on + strand, within H281DRAFT_04839 at 277.579 kb on - strand, within H281DRAFT_04839 at 277.579 kb on - strand, within H281DRAFT_04839 at 277.579 kb on - strand, within H281DRAFT_04839 at 277.579 kb on - strand, within H281DRAFT_04839 at 277.579 kb on - strand, within H281DRAFT_04839 at 277.579 kb on - strand, within H281DRAFT_04839 at 277.579 kb on - strand, within H281DRAFT_04839 at 277.592 kb on - strand at 277.658 kb on + strand at 277.658 kb on + strand at 277.705 kb on - strand at 277.705 kb on - strand at 277.745 kb on + strand at 277.745 kb on + strand at 277.745 kb on + strand at 277.746 kb on - strand at 277.746 kb on - strand at 277.746 kb on - strand at 277.746 kb on - strand at 277.746 kb on - strand at 277.787 kb on + strand at 277.840 kb on + strand at 277.841 kb on - strand at 277.851 kb on - strand at 277.888 kb on + strand at 277.889 kb on - strand at 277.896 kb on + strand at 277.896 kb on + strand at 277.896 kb on + strand at 277.897 kb on - strand at 277.912 kb on + strand at 277.916 kb on + strand at 277.916 kb on + strand at 277.916 kb on + strand at 277.917 kb on - strand at 277.917 kb on - strand at 277.917 kb on - strand at 277.917 kb on - strand at 277.917 kb on - strand at 277.917 kb on - strand at 277.920 kb on + strand at 277.920 kb on + strand at 277.920 kb on + strand at 277.920 kb on + strand at 277.920 kb on + strand at 277.920 kb on + strand at 277.920 kb on + strand at 277.921 kb on - strand at 277.921 kb on - strand at 277.921 kb on - strand at 277.921 kb on - strand at 277.926 kb on + strand at 277.926 kb on + strand at 277.927 kb on - strand at 277.932 kb on + strand at 277.932 kb on + strand at 277.932 kb on + strand at 277.932 kb on + strand at 277.932 kb on + strand at 277.933 kb on - strand at 277.938 kb on + strand at 277.938 kb on + strand at 277.938 kb on + strand at 277.942 kb on + strand at 277.943 kb on - strand at 277.943 kb on - strand at 277.943 kb on - strand at 278.017 kb on - strand at 278.042 kb on + strand at 278.043 kb on - strand at 278.043 kb on - strand at 278.043 kb on - strand at 278.043 kb on - strand at 278.048 kb on + strand at 278.077 kb on - strand at 278.080 kb on - strand at 278.136 kb on - strand at 278.160 kb on + strand at 278.177 kb on - strand at 278.177 kb on - strand at 278.177 kb on - strand at 278.237 kb on + strand at 278.237 kb on + strand at 278.237 kb on + strand at 278.238 kb on - strand at 278.238 kb on - strand at 278.238 kb on - strand at 278.240 kb on - strand at 278.311 kb on - strand at 278.323 kb on + strand at 278.324 kb on - strand at 278.324 kb on - strand at 278.364 kb on - strand at 278.416 kb on - strand at 278.595 kb on + strand at 278.666 kb on - strand, within H281DRAFT_04840 at 278.748 kb on + strand, within H281DRAFT_04840 at 278.811 kb on - strand, within H281DRAFT_04840 at 278.818 kb on + strand, within H281DRAFT_04840 at 278.902 kb on - strand, within H281DRAFT_04840 at 279.022 kb on - strand, within H281DRAFT_04840 at 279.143 kb on + strand at 279.186 kb on + strand at 279.189 kb on + strand at 279.190 kb on - strand at 279.245 kb on + strand at 279.304 kb on + strand at 279.305 kb on - strand at 279.433 kb on - strand at 279.461 kb on - strand at 279.497 kb on + strand at 279.497 kb on + strand at 279.498 kb on - strand at 279.727 kb on - strand at 279.727 kb on - strand at 279.856 kb on + strand at 279.890 kb on + strand at 279.890 kb on + strand at 279.891 kb on - strand at 279.891 kb on - strand at 279.891 kb on - strand at 279.893 kb on + strand at 279.893 kb on + strand at 279.893 kb on + strand at 279.894 kb on - strand at 279.894 kb on - strand at 279.894 kb on - strand at 279.894 kb on - strand at 279.952 kb on + strand at 279.952 kb on + strand at 279.953 kb on - strand at 279.956 kb on + strand at 279.956 kb on + strand at 279.956 kb on + strand at 279.957 kb on - strand at 280.058 kb on + strand at 280.058 kb on + strand at 280.105 kb on + strand, within H281DRAFT_04841 at 280.106 kb on - strand, within H281DRAFT_04841
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 277,544 + H281DRAFT_04839 0.60 -1.0 277,545 - H281DRAFT_04839 0.61 -0.5 277,570 + H281DRAFT_04839 0.67 -0.3 277,570 + H281DRAFT_04839 0.67 -0.3 277,570 + H281DRAFT_04839 0.67 +0.7 277,571 - H281DRAFT_04839 0.67 +0.1 277,571 - H281DRAFT_04839 0.67 +0.4 277,571 - H281DRAFT_04839 0.67 -0.0 277,574 + H281DRAFT_04839 0.68 +0.7 277,574 + H281DRAFT_04839 0.68 +0.7 277,574 + H281DRAFT_04839 0.68 +0.3 277,574 + H281DRAFT_04839 0.68 +0.7 277,574 + H281DRAFT_04839 0.68 +1.0 277,574 + H281DRAFT_04839 0.68 +1.0 277,574 + H281DRAFT_04839 0.68 -0.0 277,574 + H281DRAFT_04839 0.68 +0.3 277,574 + H281DRAFT_04839 0.68 +1.0 277,574 + +1.7 277,574 + H281DRAFT_04839 0.68 +0.6 277,574 + H281DRAFT_04839 0.68 -1.4 277,574 + H281DRAFT_04839 0.68 +0.5 277,574 + H281DRAFT_04839 0.68 -0.3 277,575 - H281DRAFT_04839 0.69 +0.2 277,575 - H281DRAFT_04839 0.69 -0.2 277,575 - H281DRAFT_04839 0.69 -1.4 277,575 - H281DRAFT_04839 0.69 +0.6 277,575 - H281DRAFT_04839 0.69 -0.7 277,575 - H281DRAFT_04839 0.69 -0.6 277,575 - H281DRAFT_04839 0.69 +0.5 277,575 - H281DRAFT_04839 0.69 +0.9 277,575 - H281DRAFT_04839 0.69 +2.0 277,575 - H281DRAFT_04839 0.69 +0.1 277,575 - H281DRAFT_04839 0.69 -0.3 277,578 + H281DRAFT_04839 0.69 -0.5 277,578 + H281DRAFT_04839 0.69 -0.7 277,578 + H281DRAFT_04839 0.69 +0.1 277,578 + H281DRAFT_04839 0.69 -0.4 277,578 + H281DRAFT_04839 0.69 -0.1 277,578 + H281DRAFT_04839 0.69 -0.7 277,578 + H281DRAFT_04839 0.69 -0.0 277,579 - H281DRAFT_04839 0.70 -0.7 277,579 - H281DRAFT_04839 0.70 +0.5 277,579 - H281DRAFT_04839 0.70 +0.4 277,579 - H281DRAFT_04839 0.70 +0.3 277,579 - H281DRAFT_04839 0.70 +0.2 277,579 - H281DRAFT_04839 0.70 -0.1 277,579 - H281DRAFT_04839 0.70 -0.6 277,592 - +2.2 277,658 + +0.1 277,658 + -0.6 277,705 - +0.3 277,705 - -1.2 277,745 + -0.4 277,745 + -0.4 277,745 + +0.3 277,746 - +0.4 277,746 - -1.9 277,746 - -1.5 277,746 - -1.6 277,746 - +1.0 277,787 + +2.4 277,840 + +0.4 277,841 - +1.0 277,851 - -1.1 277,888 + -1.8 277,889 - +1.7 277,896 + -0.1 277,896 + -0.5 277,896 + +1.2 277,897 - +1.0 277,912 + -3.1 277,916 + +2.0 277,916 + +0.1 277,916 + -1.2 277,917 - -0.0 277,917 - +0.7 277,917 - +0.5 277,917 - +0.4 277,917 - -0.6 277,917 - +0.5 277,920 + +0.2 277,920 + -0.7 277,920 + +1.4 277,920 + +0.5 277,920 + -4.3 277,920 + -1.6 277,920 + +1.4 277,921 - +2.2 277,921 - +0.0 277,921 - +0.4 277,921 - -0.8 277,926 + +0.7 277,926 + +0.5 277,927 - -0.6 277,932 + +1.2 277,932 + -0.1 277,932 + -0.0 277,932 + -0.0 277,932 + -0.2 277,933 - +0.5 277,938 + +0.5 277,938 + +3.2 277,938 + -0.6 277,942 + -0.9 277,943 - +0.3 277,943 - +0.4 277,943 - -1.0 278,017 - -0.8 278,042 + -1.4 278,043 - -0.6 278,043 - -0.9 278,043 - +0.3 278,043 - +1.1 278,048 + +0.3 278,077 - +1.0 278,080 - -0.1 278,136 - -0.4 278,160 + -3.3 278,177 - -0.4 278,177 - +0.3 278,177 - -0.4 278,237 + -0.9 278,237 + -0.6 278,237 + +0.2 278,238 - -1.3 278,238 - +0.1 278,238 - -0.3 278,240 - +0.4 278,311 - +0.2 278,323 + -0.0 278,324 - -0.2 278,324 - +0.3 278,364 - +0.8 278,416 - -0.5 278,595 + +0.3 278,666 - H281DRAFT_04840 0.37 +0.1 278,748 + H281DRAFT_04840 0.47 +0.8 278,811 - H281DRAFT_04840 0.54 -0.0 278,818 + H281DRAFT_04840 0.55 -0.7 278,902 - H281DRAFT_04840 0.65 +0.4 279,022 - H281DRAFT_04840 0.80 -0.7 279,143 + -0.2 279,186 + -2.8 279,189 + -0.0 279,190 - -1.2 279,245 + +0.4 279,304 + +0.0 279,305 - +0.7 279,433 - +0.2 279,461 - -1.0 279,497 + +0.8 279,497 + -0.1 279,498 - +0.8 279,727 - -0.3 279,727 - -0.1 279,856 + +0.2 279,890 + -0.7 279,890 + -0.3 279,891 - -0.4 279,891 - +0.6 279,891 - -1.2 279,893 + -0.0 279,893 + +1.0 279,893 + -0.0 279,894 - +0.0 279,894 - +0.4 279,894 - -0.8 279,894 - -1.0 279,952 + -0.6 279,952 + +0.4 279,953 - -0.3 279,956 + -1.2 279,956 + -0.2 279,956 + -0.5 279,957 - -0.0 280,058 + -0.3 280,058 + -0.5 280,105 + H281DRAFT_04841 0.10 +0.5 280,106 - H281DRAFT_04841 0.10 -0.0
Or see this region's nucleotide sequence