Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04387 and H281DRAFT_04388 are separated by 507 nucleotides H281DRAFT_04388 and H281DRAFT_04389 are separated by 82 nucleotides
H281DRAFT_04387: H281DRAFT_04387 - protein SCO1/2, at 100,150 to 100,707
_04387
H281DRAFT_04388: H281DRAFT_04388 - trehalose 6-phosphatase (EC 3.1.3.12), at 101,215 to 101,964
_04388
H281DRAFT_04389: H281DRAFT_04389 - trehalose 6-phosphate synthase, at 102,047 to 103,507
_04389
Position (kb) 101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 100.253 kb on + strand, within H281DRAFT_04387 at 100.253 kb on + strand, within H281DRAFT_04387 at 100.254 kb on - strand, within H281DRAFT_04387 at 100.254 kb on - strand, within H281DRAFT_04387 at 100.266 kb on + strand, within H281DRAFT_04387 at 100.266 kb on + strand at 100.266 kb on + strand, within H281DRAFT_04387 at 100.267 kb on - strand, within H281DRAFT_04387 at 100.267 kb on - strand, within H281DRAFT_04387 at 100.267 kb on - strand, within H281DRAFT_04387 at 100.280 kb on + strand, within H281DRAFT_04387 at 100.280 kb on + strand, within H281DRAFT_04387 at 100.404 kb on - strand, within H281DRAFT_04387 at 100.556 kb on + strand, within H281DRAFT_04387 at 100.825 kb on + strand at 101.681 kb on - strand, within H281DRAFT_04388 at 101.681 kb on - strand, within H281DRAFT_04388 at 101.992 kb on + strand at 101.992 kb on + strand at 101.992 kb on + strand at 101.993 kb on - strand at 101.993 kb on - strand at 101.993 kb on - strand at 102.008 kb on + strand at 102.009 kb on - strand at 102.009 kb on - strand at 102.027 kb on + strand at 102.027 kb on + strand at 102.027 kb on + strand at 102.027 kb on + strand at 102.027 kb on + strand at 102.028 kb on - strand at 102.028 kb on - strand at 102.062 kb on - strand at 102.279 kb on - strand, within H281DRAFT_04389 at 102.341 kb on + strand, within H281DRAFT_04389 at 102.366 kb on - strand, within H281DRAFT_04389 at 102.412 kb on - strand, within H281DRAFT_04389 at 102.426 kb on + strand, within H281DRAFT_04389 at 102.426 kb on + strand, within H281DRAFT_04389 at 102.427 kb on - strand, within H281DRAFT_04389 at 102.427 kb on - strand, within H281DRAFT_04389 at 102.570 kb on + strand, within H281DRAFT_04389 at 102.571 kb on - strand, within H281DRAFT_04389 at 102.746 kb on + strand, within H281DRAFT_04389 at 102.814 kb on + strand, within H281DRAFT_04389 at 102.814 kb on + strand, within H281DRAFT_04389 at 102.860 kb on + strand, within H281DRAFT_04389 at 102.861 kb on - strand, within H281DRAFT_04389
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 100,253 + H281DRAFT_04387 0.18 -2.6 100,253 + H281DRAFT_04387 0.18 -0.1 100,254 - H281DRAFT_04387 0.19 +0.2 100,254 - H281DRAFT_04387 0.19 +0.5 100,266 + H281DRAFT_04387 0.21 +0.3 100,266 + +0.3 100,266 + H281DRAFT_04387 0.21 +3.1 100,267 - H281DRAFT_04387 0.21 +0.3 100,267 - H281DRAFT_04387 0.21 -0.1 100,267 - H281DRAFT_04387 0.21 +2.7 100,280 + H281DRAFT_04387 0.23 -1.5 100,280 + H281DRAFT_04387 0.23 -1.6 100,404 - H281DRAFT_04387 0.46 -1.1 100,556 + H281DRAFT_04387 0.73 +2.0 100,825 + +0.2 101,681 - H281DRAFT_04388 0.62 -3.6 101,681 - H281DRAFT_04388 0.62 -2.1 101,992 + -0.1 101,992 + +2.4 101,992 + +0.8 101,993 - +0.2 101,993 - -0.0 101,993 - -0.1 102,008 + +0.3 102,009 - +0.9 102,009 - -0.2 102,027 + +0.2 102,027 + -1.2 102,027 + -1.0 102,027 + -0.4 102,027 + -2.5 102,028 - +0.4 102,028 - -0.4 102,062 - +0.4 102,279 - H281DRAFT_04389 0.16 -0.2 102,341 + H281DRAFT_04389 0.20 +0.1 102,366 - H281DRAFT_04389 0.22 +0.5 102,412 - H281DRAFT_04389 0.25 +0.1 102,426 + H281DRAFT_04389 0.26 -0.1 102,426 + H281DRAFT_04389 0.26 +0.4 102,427 - H281DRAFT_04389 0.26 +0.3 102,427 - H281DRAFT_04389 0.26 -0.7 102,570 + H281DRAFT_04389 0.36 +1.7 102,571 - H281DRAFT_04389 0.36 -0.1 102,746 + H281DRAFT_04389 0.48 -0.2 102,814 + H281DRAFT_04389 0.52 -0.6 102,814 + H281DRAFT_04389 0.52 -1.5 102,860 + H281DRAFT_04389 0.56 -0.9 102,861 - H281DRAFT_04389 0.56 +0.2
Or see this region's nucleotide sequence