Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04140

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04138 and H281DRAFT_04139 overlap by 14 nucleotidesH281DRAFT_04139 and H281DRAFT_04140 are separated by 231 nucleotidesH281DRAFT_04140 and H281DRAFT_04141 are separated by 41 nucleotidesH281DRAFT_04141 and H281DRAFT_04142 are separated by 129 nucleotides H281DRAFT_04138: H281DRAFT_04138 - Uncharacterized conserved protein YecE, DUF72 family, at 248,539 to 249,945 _04138 H281DRAFT_04139: H281DRAFT_04139 - peptide-methionine (S)-S-oxide reductase, at 249,932 to 250,480 _04139 H281DRAFT_04140: H281DRAFT_04140 - NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family, at 250,712 to 251,245 _04140 H281DRAFT_04141: H281DRAFT_04141 - transcriptional regulator, AsnC family, at 251,287 to 251,802 _04141 H281DRAFT_04142: H281DRAFT_04142 - Kynurenine formamidase, at 251,932 to 252,570 _04142 Position (kb) 250 251 252Strain fitness (log2 ratio) -3 -2 -1 0 1at 249.785 kb on - strand, within H281DRAFT_04138at 250.032 kb on + strand, within H281DRAFT_04139at 250.044 kb on + strand, within H281DRAFT_04139at 250.044 kb on + strand, within H281DRAFT_04139at 250.045 kb on - strand, within H281DRAFT_04139at 250.045 kb on - strand, within H281DRAFT_04139at 250.082 kb on + strand, within H281DRAFT_04139at 250.082 kb on + strandat 250.083 kb on - strand, within H281DRAFT_04139at 250.107 kb on + strand, within H281DRAFT_04139at 250.107 kb on + strand, within H281DRAFT_04139at 250.108 kb on - strand, within H281DRAFT_04139at 250.108 kb on - strand, within H281DRAFT_04139at 250.108 kb on - strand, within H281DRAFT_04139at 250.256 kb on - strand, within H281DRAFT_04139at 250.347 kb on + strand, within H281DRAFT_04139at 250.347 kb on + strand, within H281DRAFT_04139at 250.348 kb on - strand, within H281DRAFT_04139at 250.348 kb on - strand, within H281DRAFT_04139at 250.378 kb on - strand, within H281DRAFT_04139at 250.416 kb on + strand, within H281DRAFT_04139at 250.416 kb on + strand, within H281DRAFT_04139at 250.417 kb on - strand, within H281DRAFT_04139at 250.513 kb on - strandat 250.534 kb on - strandat 250.540 kb on + strandat 250.541 kb on - strandat 250.663 kb on + strandat 250.664 kb on - strandat 250.871 kb on - strand, within H281DRAFT_04140at 250.871 kb on - strand, within H281DRAFT_04140at 250.959 kb on - strand, within H281DRAFT_04140at 250.995 kb on + strand, within H281DRAFT_04140at 250.995 kb on + strand, within H281DRAFT_04140at 250.995 kb on + strand, within H281DRAFT_04140at 250.996 kb on - strand, within H281DRAFT_04140at 250.996 kb on - strand, within H281DRAFT_04140at 250.996 kb on - strand, within H281DRAFT_04140at 250.996 kb on - strand, within H281DRAFT_04140at 251.040 kb on + strand, within H281DRAFT_04140at 251.041 kb on - strand, within H281DRAFT_04140at 251.088 kb on + strand, within H281DRAFT_04140at 251.244 kb on - strandat 251.413 kb on - strand, within H281DRAFT_04141at 251.413 kb on - strand, within H281DRAFT_04141at 251.413 kb on - strand, within H281DRAFT_04141at 251.414 kb on + strand, within H281DRAFT_04141at 251.414 kb on + strand, within H281DRAFT_04141at 251.414 kb on + strandat 251.414 kb on + strand, within H281DRAFT_04141at 251.414 kb on + strand, within H281DRAFT_04141at 251.414 kb on + strand, within H281DRAFT_04141at 251.414 kb on + strandat 251.477 kb on + strand, within H281DRAFT_04141at 251.478 kb on - strand, within H281DRAFT_04141at 251.478 kb on - strand, within H281DRAFT_04141at 251.802 kb on + strandat 251.835 kb on - strandat 251.896 kb on + strandat 251.896 kb on + strandat 251.897 kb on - strandat 251.897 kb on - strandat 251.897 kb on - strandat 251.897 kb on - strandat 251.907 kb on - strandat 252.106 kb on + strand, within H281DRAFT_04142at 252.137 kb on + strand, within H281DRAFT_04142at 252.151 kb on + strand, within H281DRAFT_04142at 252.152 kb on - strand, within H281DRAFT_04142

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
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249,785 - H281DRAFT_04138 0.89 +0.2
250,032 + H281DRAFT_04139 0.18 +0.4
250,044 + H281DRAFT_04139 0.20 -1.3
250,044 + H281DRAFT_04139 0.20 -0.4
250,045 - H281DRAFT_04139 0.21 -1.1
250,045 - H281DRAFT_04139 0.21 -1.1
250,082 + H281DRAFT_04139 0.27 -0.6
250,082 + +0.4
250,083 - H281DRAFT_04139 0.28 -0.6
250,107 + H281DRAFT_04139 0.32 +0.6
250,107 + H281DRAFT_04139 0.32 +0.2
250,108 - H281DRAFT_04139 0.32 -1.5
250,108 - H281DRAFT_04139 0.32 +0.2
250,108 - H281DRAFT_04139 0.32 +0.5
250,256 - H281DRAFT_04139 0.59 -1.3
250,347 + H281DRAFT_04139 0.76 -0.3
250,347 + H281DRAFT_04139 0.76 +0.4
250,348 - H281DRAFT_04139 0.76 -0.0
250,348 - H281DRAFT_04139 0.76 -0.9
250,378 - H281DRAFT_04139 0.81 +0.0
250,416 + H281DRAFT_04139 0.88 +0.1
250,416 + H281DRAFT_04139 0.88 +0.8
250,417 - H281DRAFT_04139 0.88 -2.8
250,513 - +0.2
250,534 - -1.0
250,540 + +1.5
250,541 - -0.1
250,663 + -0.6
250,664 - +0.1
250,871 - H281DRAFT_04140 0.30 +0.6
250,871 - H281DRAFT_04140 0.30 +0.6
250,959 - H281DRAFT_04140 0.46 -0.2
250,995 + H281DRAFT_04140 0.53 -1.5
250,995 + H281DRAFT_04140 0.53 -0.0
250,995 + H281DRAFT_04140 0.53 -0.1
250,996 - H281DRAFT_04140 0.53 +0.2
250,996 - H281DRAFT_04140 0.53 +0.3
250,996 - H281DRAFT_04140 0.53 -0.5
250,996 - H281DRAFT_04140 0.53 +0.9
251,040 + H281DRAFT_04140 0.61 -1.6
251,041 - H281DRAFT_04140 0.62 +1.4
251,088 + H281DRAFT_04140 0.70 -1.6
251,244 - +0.6
251,413 - H281DRAFT_04141 0.24 +1.1
251,413 - H281DRAFT_04141 0.24 +1.6
251,413 - H281DRAFT_04141 0.24 +0.7
251,414 + H281DRAFT_04141 0.25 +0.4
251,414 + H281DRAFT_04141 0.25 +0.8
251,414 + +1.4
251,414 + H281DRAFT_04141 0.25 -0.6
251,414 + H281DRAFT_04141 0.25 -0.3
251,414 + H281DRAFT_04141 0.25 -0.8
251,414 + -1.0
251,477 + H281DRAFT_04141 0.37 +0.2
251,478 - H281DRAFT_04141 0.37 -0.5
251,478 - H281DRAFT_04141 0.37 -0.1
251,802 + -0.3
251,835 - +1.1
251,896 + +0.6
251,896 + -0.5
251,897 - -0.1
251,897 - -0.5
251,897 - -0.0
251,897 - +1.0
251,907 - -0.6
252,106 + H281DRAFT_04142 0.27 +0.6
252,137 + H281DRAFT_04142 0.32 +0.9
252,151 + H281DRAFT_04142 0.34 +0.7
252,152 - H281DRAFT_04142 0.34 -0.8

Or see this region's nucleotide sequence