Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04052 and H281DRAFT_04053 are separated by 2 nucleotides H281DRAFT_04053 and H281DRAFT_04054 are separated by 166 nucleotides H281DRAFT_04054 and H281DRAFT_04055 are separated by 140 nucleotides
H281DRAFT_04052: H281DRAFT_04052 - Predicted arabinose efflux permease, MFS family, at 153,513 to 154,763
_04052
H281DRAFT_04053: H281DRAFT_04053 - ribosomal small subunit pseudouridine synthase A (EC 5.4.99.-), at 154,766 to 155,566
_04053
H281DRAFT_04054: H281DRAFT_04054 - hypothetical protein, at 155,733 to 155,921
_04054
H281DRAFT_04055: H281DRAFT_04055 - Nucleoside-diphosphate-sugar epimerase, at 156,062 to 157,129
_04055
Position (kb) 154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 153.965 kb on - strand, within H281DRAFT_04052 at 153.965 kb on - strand, within H281DRAFT_04052 at 154.030 kb on + strand, within H281DRAFT_04052 at 154.030 kb on + strand, within H281DRAFT_04052 at 154.031 kb on - strand, within H281DRAFT_04052 at 154.111 kb on - strand, within H281DRAFT_04052 at 154.122 kb on - strand, within H281DRAFT_04052 at 154.235 kb on - strand, within H281DRAFT_04052 at 154.390 kb on + strand, within H281DRAFT_04052 at 154.390 kb on + strand, within H281DRAFT_04052 at 154.698 kb on - strand at 154.841 kb on + strand at 154.841 kb on + strand at 155.045 kb on + strand, within H281DRAFT_04053 at 155.258 kb on + strand, within H281DRAFT_04053 at 155.258 kb on + strand, within H281DRAFT_04053 at 155.258 kb on + strand, within H281DRAFT_04053 at 155.259 kb on - strand, within H281DRAFT_04053 at 155.259 kb on - strand, within H281DRAFT_04053 at 155.323 kb on - strand, within H281DRAFT_04053 at 155.411 kb on + strand, within H281DRAFT_04053 at 155.600 kb on + strand at 155.601 kb on - strand at 155.691 kb on + strand at 155.691 kb on + strand at 155.692 kb on - strand at 155.711 kb on - strand at 155.763 kb on + strand, within H281DRAFT_04054 at 155.841 kb on + strand, within H281DRAFT_04054 at 155.841 kb on + strand, within H281DRAFT_04054 at 155.842 kb on - strand, within H281DRAFT_04054 at 155.939 kb on + strand at 155.939 kb on + strand at 155.940 kb on - strand at 155.940 kb on - strand at 156.033 kb on + strand at 156.034 kb on - strand at 156.034 kb on - strand at 156.046 kb on + strand at 156.046 kb on + strand at 156.046 kb on + strand at 156.047 kb on - strand at 156.140 kb on + strand at 156.146 kb on + strand at 156.146 kb on + strand at 156.147 kb on - strand at 156.292 kb on - strand, within H281DRAFT_04055 at 156.292 kb on - strand, within H281DRAFT_04055 at 156.292 kb on - strand, within H281DRAFT_04055 at 156.480 kb on + strand, within H281DRAFT_04055 at 156.480 kb on + strand, within H281DRAFT_04055 at 156.481 kb on - strand, within H281DRAFT_04055 at 156.481 kb on - strand, within H281DRAFT_04055 at 156.481 kb on - strand, within H281DRAFT_04055
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 153,965 - H281DRAFT_04052 0.36 +1.4 153,965 - H281DRAFT_04052 0.36 +0.9 154,030 + H281DRAFT_04052 0.41 +2.3 154,030 + H281DRAFT_04052 0.41 +1.0 154,031 - H281DRAFT_04052 0.41 +1.1 154,111 - H281DRAFT_04052 0.48 -1.2 154,122 - H281DRAFT_04052 0.49 +1.7 154,235 - H281DRAFT_04052 0.58 +0.8 154,390 + H281DRAFT_04052 0.70 +0.7 154,390 + H281DRAFT_04052 0.70 -0.6 154,698 - -1.1 154,841 + +0.8 154,841 + -0.0 155,045 + H281DRAFT_04053 0.35 +0.5 155,258 + H281DRAFT_04053 0.61 +1.4 155,258 + H281DRAFT_04053 0.61 +0.6 155,258 + H281DRAFT_04053 0.61 +0.3 155,259 - H281DRAFT_04053 0.62 +0.4 155,259 - H281DRAFT_04053 0.62 +0.2 155,323 - H281DRAFT_04053 0.70 +0.8 155,411 + H281DRAFT_04053 0.81 +0.0 155,600 + +1.8 155,601 - -1.5 155,691 + -1.3 155,691 + -0.5 155,692 - -0.3 155,711 - +0.4 155,763 + H281DRAFT_04054 0.16 +0.1 155,841 + H281DRAFT_04054 0.57 -0.6 155,841 + H281DRAFT_04054 0.57 -1.1 155,842 - H281DRAFT_04054 0.58 -0.3 155,939 + -0.8 155,939 + -0.2 155,940 - +0.3 155,940 - -0.5 156,033 + +1.0 156,034 - +0.3 156,034 - -3.4 156,046 + +0.4 156,046 + +2.0 156,046 + -0.7 156,047 - +0.5 156,140 + +0.0 156,146 + -0.2 156,146 + -2.6 156,147 - -0.1 156,292 - H281DRAFT_04055 0.22 -1.1 156,292 - H281DRAFT_04055 0.22 -0.8 156,292 - H281DRAFT_04055 0.22 +0.0 156,480 + H281DRAFT_04055 0.39 +2.6 156,480 + H281DRAFT_04055 0.39 +0.1 156,481 - H281DRAFT_04055 0.39 +0.2 156,481 - H281DRAFT_04055 0.39 -1.3 156,481 - H281DRAFT_04055 0.39 -0.1
Or see this region's nucleotide sequence