Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04050 and H281DRAFT_04051 overlap by 4 nucleotides H281DRAFT_04051 and H281DRAFT_04052 are separated by 218 nucleotides
H281DRAFT_04050: H281DRAFT_04050 - beta-aspartyl-peptidase (threonine type), at 151,364 to 152,359
_04050
H281DRAFT_04051: H281DRAFT_04051 - transcriptional regulator, RpiR family, at 152,356 to 153,294
_04051
H281DRAFT_04052: H281DRAFT_04052 - Predicted arabinose efflux permease, MFS family, at 153,513 to 154,763
_04052
Position (kb) 152
153
154 Strain fitness (log2 ratio) -2
-1
0
1
2 at 151.575 kb on + strand, within H281DRAFT_04050 at 152.634 kb on - strand, within H281DRAFT_04051 at 152.748 kb on - strand, within H281DRAFT_04051 at 152.859 kb on - strand, within H281DRAFT_04051 at 153.254 kb on + strand at 153.264 kb on + strand at 153.288 kb on + strand at 153.288 kb on + strand at 153.289 kb on - strand at 153.398 kb on - strand at 153.432 kb on - strand at 153.965 kb on - strand, within H281DRAFT_04052 at 153.965 kb on - strand, within H281DRAFT_04052 at 154.030 kb on + strand, within H281DRAFT_04052 at 154.030 kb on + strand, within H281DRAFT_04052 at 154.031 kb on - strand, within H281DRAFT_04052 at 154.111 kb on - strand, within H281DRAFT_04052 at 154.122 kb on - strand, within H281DRAFT_04052 at 154.235 kb on - strand, within H281DRAFT_04052
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 151,575 + H281DRAFT_04050 0.21 -0.6 152,634 - H281DRAFT_04051 0.30 -2.4 152,748 - H281DRAFT_04051 0.42 -1.4 152,859 - H281DRAFT_04051 0.54 -0.7 153,254 + +0.2 153,264 + +0.4 153,288 + -2.5 153,288 + +0.0 153,289 - +1.4 153,398 - +1.0 153,432 - -0.1 153,965 - H281DRAFT_04052 0.36 +1.4 153,965 - H281DRAFT_04052 0.36 +0.9 154,030 + H281DRAFT_04052 0.41 +2.3 154,030 + H281DRAFT_04052 0.41 +1.0 154,031 - H281DRAFT_04052 0.41 +1.1 154,111 - H281DRAFT_04052 0.48 -1.2 154,122 - H281DRAFT_04052 0.49 +1.7 154,235 - H281DRAFT_04052 0.58 +0.8
Or see this region's nucleotide sequence