Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03955 and H281DRAFT_03956 are separated by 169 nucleotides H281DRAFT_03956 and H281DRAFT_03957 are separated by 22 nucleotides H281DRAFT_03957 and H281DRAFT_03958 are separated by 159 nucleotides H281DRAFT_03958 and H281DRAFT_03959 are separated by 62 nucleotides
H281DRAFT_03955: H281DRAFT_03955 - transporter, CPA2 family, at 57,316 to 59,073
_03955
H281DRAFT_03956: H281DRAFT_03956 - Protein of unknown function (DUF2848), at 59,243 to 59,929
_03956
H281DRAFT_03957: H281DRAFT_03957 - D-galactonate transporter, at 59,952 to 61,301
_03957
H281DRAFT_03958: H281DRAFT_03958 - DNA-binding transcriptional regulator, GntR family, at 61,461 to 62,141
_03958
H281DRAFT_03959: H281DRAFT_03959 - aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 62,204 to 63,583
_03959
Position (kb) 59
60
61
62 Strain fitness (log2 ratio) -2
-1
0
1 at 58.967 kb on + strand at 58.967 kb on + strand at 58.968 kb on - strand at 59.096 kb on - strand at 59.118 kb on - strand at 59.269 kb on - strand at 59.307 kb on + strand at 59.308 kb on - strand at 59.420 kb on + strand, within H281DRAFT_03956 at 59.421 kb on - strand, within H281DRAFT_03956 at 59.679 kb on - strand, within H281DRAFT_03956 at 59.913 kb on + strand at 59.914 kb on - strand at 59.933 kb on - strand at 60.061 kb on - strand at 60.061 kb on - strand at 60.096 kb on + strand, within H281DRAFT_03957 at 60.177 kb on + strand, within H281DRAFT_03957 at 60.185 kb on - strand, within H281DRAFT_03957 at 60.310 kb on - strand, within H281DRAFT_03957 at 60.310 kb on - strand, within H281DRAFT_03957 at 60.369 kb on + strand, within H281DRAFT_03957 at 60.369 kb on + strand, within H281DRAFT_03957 at 60.370 kb on - strand, within H281DRAFT_03957 at 60.370 kb on - strand, within H281DRAFT_03957 at 60.632 kb on - strand, within H281DRAFT_03957 at 60.689 kb on + strand, within H281DRAFT_03957 at 60.689 kb on + strand, within H281DRAFT_03957 at 60.689 kb on + strand, within H281DRAFT_03957 at 60.689 kb on + strand, within H281DRAFT_03957 at 60.741 kb on + strand, within H281DRAFT_03957 at 60.741 kb on + strand, within H281DRAFT_03957 at 60.741 kb on + strand, within H281DRAFT_03957 at 60.742 kb on - strand, within H281DRAFT_03957 at 60.924 kb on + strand, within H281DRAFT_03957 at 61.020 kb on + strand, within H281DRAFT_03957 at 61.020 kb on + strand, within H281DRAFT_03957 at 61.020 kb on + strand, within H281DRAFT_03957 at 61.021 kb on - strand, within H281DRAFT_03957 at 61.021 kb on - strand, within H281DRAFT_03957 at 61.137 kb on + strand, within H281DRAFT_03957 at 61.150 kb on - strand, within H281DRAFT_03957 at 61.153 kb on + strand, within H281DRAFT_03957 at 61.153 kb on + strand, within H281DRAFT_03957 at 61.305 kb on - strand at 61.310 kb on + strand at 61.310 kb on + strand at 61.310 kb on + strand at 61.311 kb on - strand at 61.311 kb on - strand at 61.311 kb on - strand at 61.424 kb on + strand at 61.424 kb on + strand at 61.424 kb on + strand at 61.771 kb on - strand, within H281DRAFT_03958 at 61.771 kb on - strand, within H281DRAFT_03958 at 61.771 kb on - strand, within H281DRAFT_03958 at 61.812 kb on + strand, within H281DRAFT_03958 at 61.813 kb on - strand, within H281DRAFT_03958 at 61.870 kb on + strand, within H281DRAFT_03958 at 61.870 kb on + strand, within H281DRAFT_03958 at 61.870 kb on + strand, within H281DRAFT_03958 at 61.870 kb on + strand, within H281DRAFT_03958 at 61.870 kb on + strand, within H281DRAFT_03958 at 61.871 kb on - strand, within H281DRAFT_03958 at 61.871 kb on - strand, within H281DRAFT_03958 at 62.102 kb on + strand at 62.152 kb on + strand at 62.152 kb on + strand at 62.162 kb on - strand at 62.165 kb on + strand at 62.165 kb on + strand at 62.166 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 58,967 + +0.1 58,967 + -2.0 58,968 - -1.3 59,096 - +0.6 59,118 - +1.0 59,269 - +1.3 59,307 + +0.4 59,308 - -0.7 59,420 + H281DRAFT_03956 0.26 -0.8 59,421 - H281DRAFT_03956 0.26 +0.6 59,679 - H281DRAFT_03956 0.63 +0.6 59,913 + -0.1 59,914 - +0.1 59,933 - +0.3 60,061 - +0.4 60,061 - -0.3 60,096 + H281DRAFT_03957 0.11 +1.0 60,177 + H281DRAFT_03957 0.17 +0.8 60,185 - H281DRAFT_03957 0.17 +0.3 60,310 - H281DRAFT_03957 0.27 +0.4 60,310 - H281DRAFT_03957 0.27 -0.1 60,369 + H281DRAFT_03957 0.31 +1.2 60,369 + H281DRAFT_03957 0.31 -0.2 60,370 - H281DRAFT_03957 0.31 +0.2 60,370 - H281DRAFT_03957 0.31 -0.2 60,632 - H281DRAFT_03957 0.50 +0.3 60,689 + H281DRAFT_03957 0.55 +0.5 60,689 + H281DRAFT_03957 0.55 -0.8 60,689 + H281DRAFT_03957 0.55 +1.2 60,689 + H281DRAFT_03957 0.55 +1.5 60,741 + H281DRAFT_03957 0.58 -0.6 60,741 + H281DRAFT_03957 0.58 -0.2 60,741 + H281DRAFT_03957 0.58 +0.9 60,742 - H281DRAFT_03957 0.59 -2.1 60,924 + H281DRAFT_03957 0.72 +0.7 61,020 + H281DRAFT_03957 0.79 -0.0 61,020 + H281DRAFT_03957 0.79 -0.6 61,020 + H281DRAFT_03957 0.79 -2.0 61,021 - H281DRAFT_03957 0.79 +0.7 61,021 - H281DRAFT_03957 0.79 -0.6 61,137 + H281DRAFT_03957 0.88 +0.5 61,150 - H281DRAFT_03957 0.89 +0.5 61,153 + H281DRAFT_03957 0.89 +0.3 61,153 + H281DRAFT_03957 0.89 +0.1 61,305 - -0.0 61,310 + +0.7 61,310 + +0.4 61,310 + +0.4 61,311 - +0.1 61,311 - +0.5 61,311 - -0.0 61,424 + +1.3 61,424 + -0.8 61,424 + +0.5 61,771 - H281DRAFT_03958 0.46 +0.8 61,771 - H281DRAFT_03958 0.46 +1.2 61,771 - H281DRAFT_03958 0.46 +0.5 61,812 + H281DRAFT_03958 0.52 +1.1 61,813 - H281DRAFT_03958 0.52 +1.1 61,870 + H281DRAFT_03958 0.60 -0.6 61,870 + H281DRAFT_03958 0.60 +1.0 61,870 + H281DRAFT_03958 0.60 -0.0 61,870 + H281DRAFT_03958 0.60 +0.7 61,870 + H281DRAFT_03958 0.60 +0.6 61,871 - H281DRAFT_03958 0.60 +0.4 61,871 - H281DRAFT_03958 0.60 -1.1 62,102 + -0.8 62,152 + +1.4 62,152 + +0.3 62,162 - +0.6 62,165 + +0.3 62,165 + -0.9 62,166 - +0.3
Or see this region's nucleotide sequence