Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03952 and H281DRAFT_03953 are separated by 190 nucleotides H281DRAFT_03953 and H281DRAFT_03954 are separated by 67 nucleotides
H281DRAFT_03952: H281DRAFT_03952 - Protein of unknown function (DUF2968), at 54,552 to 55,349
_03952
H281DRAFT_03953: H281DRAFT_03953 - hypothetical protein, at 55,540 to 55,638
_03953
H281DRAFT_03954: H281DRAFT_03954 - Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD (putrescine degradation), contains GATase1-like domain, at 55,706 to 57,187
_03954
Position (kb) 55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 54.553 kb on + strand at 54.554 kb on - strand at 54.554 kb on - strand at 54.785 kb on - strand, within H281DRAFT_03952 at 54.822 kb on + strand, within H281DRAFT_03952 at 54.937 kb on + strand, within H281DRAFT_03952 at 54.941 kb on - strand, within H281DRAFT_03952 at 54.941 kb on - strand, within H281DRAFT_03952 at 54.958 kb on + strand, within H281DRAFT_03952 at 54.991 kb on + strand, within H281DRAFT_03952 at 54.992 kb on - strand, within H281DRAFT_03952 at 55.039 kb on - strand, within H281DRAFT_03952 at 55.214 kb on + strand, within H281DRAFT_03952 at 55.215 kb on - strand, within H281DRAFT_03952 at 55.349 kb on + strand at 55.350 kb on - strand at 55.461 kb on - strand at 55.606 kb on - strand, within H281DRAFT_03953 at 55.621 kb on - strand, within H281DRAFT_03953 at 55.621 kb on - strand, within H281DRAFT_03953 at 55.641 kb on - strand at 55.707 kb on + strand at 55.960 kb on + strand, within H281DRAFT_03954 at 55.960 kb on + strand, within H281DRAFT_03954 at 55.961 kb on - strand, within H281DRAFT_03954 at 56.067 kb on + strand, within H281DRAFT_03954 at 56.170 kb on - strand, within H281DRAFT_03954 at 56.223 kb on + strand, within H281DRAFT_03954 at 56.223 kb on + strand, within H281DRAFT_03954 at 56.224 kb on - strand, within H281DRAFT_03954 at 56.397 kb on + strand, within H281DRAFT_03954 at 56.398 kb on - strand, within H281DRAFT_03954
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 54,553 + +0.9 54,554 - +0.4 54,554 - -0.0 54,785 - H281DRAFT_03952 0.29 +0.0 54,822 + H281DRAFT_03952 0.34 -0.0 54,937 + H281DRAFT_03952 0.48 -0.5 54,941 - H281DRAFT_03952 0.49 +0.0 54,941 - H281DRAFT_03952 0.49 +0.3 54,958 + H281DRAFT_03952 0.51 +0.5 54,991 + H281DRAFT_03952 0.55 -0.9 54,992 - H281DRAFT_03952 0.55 +0.7 55,039 - H281DRAFT_03952 0.61 -0.6 55,214 + H281DRAFT_03952 0.83 +0.2 55,215 - H281DRAFT_03952 0.83 -0.4 55,349 + -0.1 55,350 - -0.1 55,461 - -2.9 55,606 - H281DRAFT_03953 0.67 +1.0 55,621 - H281DRAFT_03953 0.82 +0.4 55,621 - H281DRAFT_03953 0.82 -0.9 55,641 - -0.2 55,707 + +0.4 55,960 + H281DRAFT_03954 0.17 +1.4 55,960 + H281DRAFT_03954 0.17 +0.7 55,961 - H281DRAFT_03954 0.17 -0.2 56,067 + H281DRAFT_03954 0.24 +0.6 56,170 - H281DRAFT_03954 0.31 +0.1 56,223 + H281DRAFT_03954 0.35 +0.5 56,223 + H281DRAFT_03954 0.35 -0.6 56,224 - H281DRAFT_03954 0.35 +1.2 56,397 + H281DRAFT_03954 0.47 -1.3 56,398 - H281DRAFT_03954 0.47 -0.2
Or see this region's nucleotide sequence