Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03888 and H281DRAFT_03889 are separated by 4 nucleotides H281DRAFT_03889 and H281DRAFT_03890 are separated by 193 nucleotides
H281DRAFT_03888: H281DRAFT_03888 - His Kinase A (phospho-acceptor) domain-containing protein, at 418,717 to 420,375
_03888
H281DRAFT_03889: H281DRAFT_03889 - circadian clock protein KaiC, at 420,380 to 421,897
_03889
H281DRAFT_03890: H281DRAFT_03890 - Broad specificity phosphatase PhoE, at 422,091 to 422,681
_03890
Position (kb) 420
421
422 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 419.516 kb on + strand, within H281DRAFT_03888 at 419.516 kb on + strand, within H281DRAFT_03888 at 419.517 kb on - strand, within H281DRAFT_03888 at 419.523 kb on + strand, within H281DRAFT_03888 at 419.607 kb on + strand, within H281DRAFT_03888 at 419.892 kb on + strand, within H281DRAFT_03888 at 420.065 kb on - strand, within H281DRAFT_03888 at 420.667 kb on + strand, within H281DRAFT_03889 at 420.753 kb on + strand, within H281DRAFT_03889 at 420.754 kb on - strand, within H281DRAFT_03889 at 420.780 kb on + strand, within H281DRAFT_03889 at 420.807 kb on + strand, within H281DRAFT_03889 at 420.807 kb on + strand, within H281DRAFT_03889 at 420.807 kb on + strand, within H281DRAFT_03889 at 420.808 kb on - strand, within H281DRAFT_03889 at 420.915 kb on + strand, within H281DRAFT_03889 at 420.916 kb on - strand, within H281DRAFT_03889 at 420.984 kb on + strand, within H281DRAFT_03889 at 420.984 kb on + strand, within H281DRAFT_03889 at 420.984 kb on + strand, within H281DRAFT_03889 at 420.984 kb on + strand, within H281DRAFT_03889 at 420.984 kb on + strand, within H281DRAFT_03889 at 420.985 kb on - strand, within H281DRAFT_03889 at 420.985 kb on - strand, within H281DRAFT_03889 at 420.987 kb on + strand, within H281DRAFT_03889 at 420.988 kb on - strand, within H281DRAFT_03889 at 420.988 kb on - strand, within H281DRAFT_03889 at 421.339 kb on + strand, within H281DRAFT_03889 at 421.369 kb on + strand, within H281DRAFT_03889 at 421.369 kb on + strand, within H281DRAFT_03889 at 421.668 kb on - strand, within H281DRAFT_03889 at 421.702 kb on + strand, within H281DRAFT_03889 at 421.702 kb on + strand, within H281DRAFT_03889 at 421.702 kb on + strand, within H281DRAFT_03889 at 421.703 kb on - strand, within H281DRAFT_03889 at 421.703 kb on - strand, within H281DRAFT_03889 at 421.703 kb on - strand, within H281DRAFT_03889 at 421.703 kb on - strand, within H281DRAFT_03889 at 421.707 kb on + strand, within H281DRAFT_03889 at 421.708 kb on - strand, within H281DRAFT_03889 at 421.768 kb on + strand at 421.797 kb on + strand at 421.797 kb on + strand at 421.797 kb on + strand at 421.797 kb on + strand at 421.797 kb on + strand at 421.798 kb on - strand at 421.897 kb on + strand at 421.898 kb on - strand at 421.908 kb on + strand at 421.908 kb on + strand at 421.908 kb on + strand at 421.908 kb on + strand at 421.909 kb on - strand at 421.909 kb on - strand at 421.909 kb on - strand at 421.918 kb on + strand at 422.030 kb on + strand at 422.030 kb on + strand at 422.030 kb on + strand at 422.067 kb on + strand at 422.067 kb on + strand at 422.068 kb on - strand at 422.292 kb on + strand, within H281DRAFT_03890 at 422.293 kb on - strand, within H281DRAFT_03890 at 422.723 kb on - strand at 422.740 kb on - strand at 422.747 kb on - strand at 422.747 kb on - strand at 422.806 kb on + strand at 422.806 kb on + strand at 422.806 kb on + strand at 422.806 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 419,516 + H281DRAFT_03888 0.48 -0.7 419,516 + H281DRAFT_03888 0.48 -0.7 419,517 - H281DRAFT_03888 0.48 -0.5 419,523 + H281DRAFT_03888 0.49 +0.0 419,607 + H281DRAFT_03888 0.54 -0.6 419,892 + H281DRAFT_03888 0.71 +0.5 420,065 - H281DRAFT_03888 0.81 +0.5 420,667 + H281DRAFT_03889 0.19 -0.1 420,753 + H281DRAFT_03889 0.25 -0.4 420,754 - H281DRAFT_03889 0.25 -0.7 420,780 + H281DRAFT_03889 0.26 +0.0 420,807 + H281DRAFT_03889 0.28 -0.1 420,807 + H281DRAFT_03889 0.28 -0.3 420,807 + H281DRAFT_03889 0.28 +0.5 420,808 - H281DRAFT_03889 0.28 -0.9 420,915 + H281DRAFT_03889 0.35 -0.4 420,916 - H281DRAFT_03889 0.35 -0.3 420,984 + H281DRAFT_03889 0.40 -0.7 420,984 + H281DRAFT_03889 0.40 +0.6 420,984 + H281DRAFT_03889 0.40 +0.0 420,984 + H281DRAFT_03889 0.40 +0.1 420,984 + H281DRAFT_03889 0.40 -0.3 420,985 - H281DRAFT_03889 0.40 +0.2 420,985 - H281DRAFT_03889 0.40 +0.2 420,987 + H281DRAFT_03889 0.40 +0.2 420,988 - H281DRAFT_03889 0.40 -0.0 420,988 - H281DRAFT_03889 0.40 -0.1 421,339 + H281DRAFT_03889 0.63 -0.7 421,369 + H281DRAFT_03889 0.65 -0.9 421,369 + H281DRAFT_03889 0.65 +0.4 421,668 - H281DRAFT_03889 0.85 +0.1 421,702 + H281DRAFT_03889 0.87 -0.2 421,702 + H281DRAFT_03889 0.87 +0.0 421,702 + H281DRAFT_03889 0.87 +0.1 421,703 - H281DRAFT_03889 0.87 +0.6 421,703 - H281DRAFT_03889 0.87 -1.0 421,703 - H281DRAFT_03889 0.87 -0.2 421,703 - H281DRAFT_03889 0.87 -0.4 421,707 + H281DRAFT_03889 0.87 +0.3 421,708 - H281DRAFT_03889 0.87 -0.8 421,768 + -0.6 421,797 + -0.8 421,797 + +0.1 421,797 + +1.1 421,797 + -5.7 421,797 + +0.1 421,798 - +1.1 421,897 + -1.3 421,898 - -0.9 421,908 + +0.1 421,908 + -0.2 421,908 + +0.0 421,908 + -0.1 421,909 - +1.1 421,909 - +1.7 421,909 - +0.6 421,918 + +0.7 422,030 + +1.0 422,030 + -0.8 422,030 + +0.4 422,067 + +0.6 422,067 + +0.3 422,068 - +1.0 422,292 + H281DRAFT_03890 0.34 -0.4 422,293 - H281DRAFT_03890 0.34 +0.4 422,723 - +0.8 422,740 - -0.1 422,747 - -1.6 422,747 - +1.6 422,806 + +0.4 422,806 + +0.5 422,806 + -0.5 422,806 + +0.1
Or see this region's nucleotide sequence