Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03701 and H281DRAFT_03702 are separated by 24 nucleotides H281DRAFT_03702 and H281DRAFT_03703 overlap by 4 nucleotides H281DRAFT_03703 and H281DRAFT_03704 overlap by 4 nucleotides
H281DRAFT_03701: H281DRAFT_03701 - Enoyl-CoA hydratase, at 214,042 to 214,893
_03701
H281DRAFT_03702: H281DRAFT_03702 - transcriptional regulator, MarR family, at 214,918 to 215,490
_03702
H281DRAFT_03703: H281DRAFT_03703 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 215,487 to 216,260
_03703
H281DRAFT_03704: H281DRAFT_03704 - anthraniloyl-CoA monooxygenase, at 216,257 to 218,629
_03704
Position (kb) 215
216
217 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 214.703 kb on + strand, within H281DRAFT_03701 at 214.704 kb on - strand, within H281DRAFT_03701 at 214.785 kb on + strand, within H281DRAFT_03701 at 215.080 kb on + strand, within H281DRAFT_03702 at 215.152 kb on - strand, within H281DRAFT_03702 at 215.705 kb on - strand, within H281DRAFT_03703 at 215.813 kb on - strand, within H281DRAFT_03703 at 216.803 kb on + strand, within H281DRAFT_03704 at 216.879 kb on + strand, within H281DRAFT_03704 at 217.018 kb on - strand, within H281DRAFT_03704 at 217.171 kb on + strand, within H281DRAFT_03704 at 217.172 kb on - strand, within H281DRAFT_03704 at 217.203 kb on + strand, within H281DRAFT_03704 at 217.204 kb on - strand, within H281DRAFT_03704
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 214,703 + H281DRAFT_03701 0.78 -0.0 214,704 - H281DRAFT_03701 0.78 +0.8 214,785 + H281DRAFT_03701 0.87 +1.3 215,080 + H281DRAFT_03702 0.28 +1.6 215,152 - H281DRAFT_03702 0.41 +0.3 215,705 - H281DRAFT_03703 0.28 +0.8 215,813 - H281DRAFT_03703 0.42 +0.9 216,803 + H281DRAFT_03704 0.23 -0.5 216,879 + H281DRAFT_03704 0.26 -0.6 217,018 - H281DRAFT_03704 0.32 -2.8 217,171 + H281DRAFT_03704 0.39 +0.0 217,172 - H281DRAFT_03704 0.39 +1.0 217,203 + H281DRAFT_03704 0.40 +1.1 217,204 - H281DRAFT_03704 0.40 -0.5
Or see this region's nucleotide sequence