Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03700 and H281DRAFT_03701 are separated by 1 nucleotides H281DRAFT_03701 and H281DRAFT_03702 are separated by 24 nucleotides H281DRAFT_03702 and H281DRAFT_03703 overlap by 4 nucleotides
H281DRAFT_03700: H281DRAFT_03700 - acyl-CoA dehydrogenase, at 212,832 to 214,040
_03700
H281DRAFT_03701: H281DRAFT_03701 - Enoyl-CoA hydratase, at 214,042 to 214,893
_03701
H281DRAFT_03702: H281DRAFT_03702 - transcriptional regulator, MarR family, at 214,918 to 215,490
_03702
H281DRAFT_03703: H281DRAFT_03703 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 215,487 to 216,260
_03703
Position (kb) 214
215 Strain fitness (log2 ratio) -1
0
1 at 213.128 kb on + strand, within H281DRAFT_03700 at 213.128 kb on + strand, within H281DRAFT_03700 at 213.128 kb on + strand, within H281DRAFT_03700 at 213.128 kb on + strand, within H281DRAFT_03700 at 213.128 kb on + strand, within H281DRAFT_03700 at 213.133 kb on - strand, within H281DRAFT_03700 at 213.133 kb on - strand, within H281DRAFT_03700 at 213.560 kb on - strand, within H281DRAFT_03700 at 213.673 kb on + strand, within H281DRAFT_03700 at 214.110 kb on + strand at 214.290 kb on - strand, within H281DRAFT_03701 at 214.703 kb on + strand, within H281DRAFT_03701 at 214.704 kb on - strand, within H281DRAFT_03701 at 214.785 kb on + strand, within H281DRAFT_03701 at 215.080 kb on + strand, within H281DRAFT_03702 at 215.152 kb on - strand, within H281DRAFT_03702 at 215.705 kb on - strand, within H281DRAFT_03703 at 215.813 kb on - strand, within H281DRAFT_03703
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 213,128 + H281DRAFT_03700 0.24 +0.4 213,128 + H281DRAFT_03700 0.24 -0.5 213,128 + H281DRAFT_03700 0.24 -0.6 213,128 + H281DRAFT_03700 0.24 -0.0 213,128 + H281DRAFT_03700 0.24 -0.5 213,133 - H281DRAFT_03700 0.25 -0.7 213,133 - H281DRAFT_03700 0.25 +1.0 213,560 - H281DRAFT_03700 0.60 -0.1 213,673 + H281DRAFT_03700 0.70 -0.7 214,110 + +1.7 214,290 - H281DRAFT_03701 0.29 +0.6 214,703 + H281DRAFT_03701 0.78 -0.0 214,704 - H281DRAFT_03701 0.78 +0.8 214,785 + H281DRAFT_03701 0.87 +1.3 215,080 + H281DRAFT_03702 0.28 +1.6 215,152 - H281DRAFT_03702 0.41 +0.3 215,705 - H281DRAFT_03703 0.28 +0.8 215,813 - H281DRAFT_03703 0.42 +0.9
Or see this region's nucleotide sequence