Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03639

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03637 and H281DRAFT_03638 are separated by 26 nucleotidesH281DRAFT_03638 and H281DRAFT_03639 are separated by 32 nucleotidesH281DRAFT_03639 and H281DRAFT_03640 are separated by 0 nucleotidesH281DRAFT_03640 and H281DRAFT_03641 overlap by 4 nucleotides H281DRAFT_03637: H281DRAFT_03637 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 145,976 to 146,743 _03637 H281DRAFT_03638: H281DRAFT_03638 - Cupin domain-containing protein, at 146,770 to 147,297 _03638 H281DRAFT_03639: H281DRAFT_03639 - Pimeloyl-ACP methyl ester carboxylesterase, at 147,330 to 148,223 _03639 H281DRAFT_03640: H281DRAFT_03640 - transcriptional regulator, IclR family, at 148,224 to 149,108 _03640 H281DRAFT_03641: H281DRAFT_03641 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 149,105 to 149,914 _03641 Position (kb) 147 148 149Strain fitness (log2 ratio) -1 0 1at 146.371 kb on - strand, within H281DRAFT_03637at 146.580 kb on - strand, within H281DRAFT_03637at 146.603 kb on + strand, within H281DRAFT_03637at 146.939 kb on - strand, within H281DRAFT_03638at 148.733 kb on + strand, within H281DRAFT_03640at 148.734 kb on - strand, within H281DRAFT_03640at 149.009 kb on - strand, within H281DRAFT_03640

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
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146,371 - H281DRAFT_03637 0.51 -0.9
146,580 - H281DRAFT_03637 0.79 -1.2
146,603 + H281DRAFT_03637 0.82 +0.4
146,939 - H281DRAFT_03638 0.32 -0.5
148,733 + H281DRAFT_03640 0.58 -1.2
148,734 - H281DRAFT_03640 0.58 -0.7
149,009 - H281DRAFT_03640 0.89 -0.4

Or see this region's nucleotide sequence