Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03636 and H281DRAFT_03637 overlap by 8 nucleotides H281DRAFT_03637 and H281DRAFT_03638 are separated by 26 nucleotides H281DRAFT_03638 and H281DRAFT_03639 are separated by 32 nucleotides
H281DRAFT_03636: H281DRAFT_03636 - Phenylpropionate dioxygenase, large terminal subunit, at 144,880 to 145,983
_03636
H281DRAFT_03637: H281DRAFT_03637 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 145,976 to 146,743
_03637
H281DRAFT_03638: H281DRAFT_03638 - Cupin domain-containing protein, at 146,770 to 147,297
_03638
H281DRAFT_03639: H281DRAFT_03639 - Pimeloyl-ACP methyl ester carboxylesterase, at 147,330 to 148,223
_03639
Position (kb) 145
146
147 Strain fitness (log2 ratio) -1
0
1
2 at 145.336 kb on + strand, within H281DRAFT_03636 at 145.381 kb on + strand, within H281DRAFT_03636 at 145.729 kb on + strand, within H281DRAFT_03636 at 145.780 kb on + strand, within H281DRAFT_03636 at 145.781 kb on - strand, within H281DRAFT_03636 at 145.828 kb on + strand, within H281DRAFT_03636 at 145.981 kb on + strand at 146.165 kb on + strand, within H281DRAFT_03637 at 146.371 kb on - strand, within H281DRAFT_03637 at 146.580 kb on - strand, within H281DRAFT_03637 at 146.603 kb on + strand, within H281DRAFT_03637 at 146.939 kb on - strand, within H281DRAFT_03638
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 145,336 + H281DRAFT_03636 0.41 -1.3 145,381 + H281DRAFT_03636 0.45 +0.3 145,729 + H281DRAFT_03636 0.77 -0.3 145,780 + H281DRAFT_03636 0.82 -0.6 145,781 - H281DRAFT_03636 0.82 -0.1 145,828 + H281DRAFT_03636 0.86 +1.9 145,981 + -0.9 146,165 + H281DRAFT_03637 0.25 -0.0 146,371 - H281DRAFT_03637 0.51 -0.9 146,580 - H281DRAFT_03637 0.79 -1.2 146,603 + H281DRAFT_03637 0.82 +0.4 146,939 - H281DRAFT_03638 0.32 -0.5
Or see this region's nucleotide sequence