Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03593 and H281DRAFT_03594 are separated by 81 nucleotides H281DRAFT_03594 and H281DRAFT_03595 are separated by 24 nucleotides H281DRAFT_03595 and H281DRAFT_03596 are separated by 91 nucleotides
H281DRAFT_03593: H281DRAFT_03593 - Initiator Replication protein, at 102,239 to 103,585
_03593
H281DRAFT_03594: H281DRAFT_03594 - ParB family protein, at 103,667 to 104,725
_03594
H281DRAFT_03595: H281DRAFT_03595 - plasmid segregation oscillating ATPase ParF, at 104,750 to 105,412
_03595
H281DRAFT_03596: H281DRAFT_03596 - hypothetical protein, at 105,504 to 106,133
_03596
Position (kb) 103
104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 103.654 kb on + strand at 103.665 kb on + strand at 103.666 kb on - strand at 103.666 kb on - strand at 103.666 kb on - strand at 103.668 kb on + strand at 103.668 kb on + strand at 103.668 kb on + strand at 103.669 kb on - strand at 104.738 kb on - strand at 105.523 kb on + strand at 105.671 kb on + strand, within H281DRAFT_03596 at 105.671 kb on + strand, within H281DRAFT_03596 at 105.671 kb on + strand, within H281DRAFT_03596 at 105.671 kb on + strand, within H281DRAFT_03596 at 105.672 kb on - strand, within H281DRAFT_03596 at 105.672 kb on - strand, within H281DRAFT_03596 at 105.672 kb on - strand, within H281DRAFT_03596
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 103,654 + +0.0 103,665 + +0.1 103,666 - +0.3 103,666 - +0.1 103,666 - +0.3 103,668 + +0.6 103,668 + +0.4 103,668 + -0.5 103,669 - -2.9 104,738 - -0.5 105,523 + -0.9 105,671 + H281DRAFT_03596 0.27 +0.3 105,671 + H281DRAFT_03596 0.27 +0.5 105,671 + H281DRAFT_03596 0.27 +0.1 105,671 + H281DRAFT_03596 0.27 -0.6 105,672 - H281DRAFT_03596 0.27 +1.1 105,672 - H281DRAFT_03596 0.27 -0.5 105,672 - H281DRAFT_03596 0.27 -0.3
Or see this region's nucleotide sequence