Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03570 and H281DRAFT_03571 are separated by 59 nucleotides H281DRAFT_03571 and H281DRAFT_03572 overlap by 4 nucleotides
H281DRAFT_03570: H281DRAFT_03570 - Sugar phosphate permease, at 77,346 to 78,677
_03570
H281DRAFT_03571: H281DRAFT_03571 - hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 78,737 to 79,702
_03571
H281DRAFT_03572: H281DRAFT_03572 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 79,699 to 80,892
_03572
Position (kb) 78
79
80 Strain fitness (log2 ratio) -1
0
1
2
3 at 77.779 kb on - strand, within H281DRAFT_03570 at 77.782 kb on + strand, within H281DRAFT_03570 at 77.782 kb on + strand, within H281DRAFT_03570 at 78.229 kb on + strand, within H281DRAFT_03570 at 78.257 kb on - strand, within H281DRAFT_03570 at 78.259 kb on + strand, within H281DRAFT_03570 at 78.539 kb on + strand, within H281DRAFT_03570 at 78.540 kb on - strand, within H281DRAFT_03570 at 78.540 kb on - strand, within H281DRAFT_03570 at 78.738 kb on + strand at 78.738 kb on + strand at 78.753 kb on + strand at 79.042 kb on + strand, within H281DRAFT_03571 at 79.042 kb on + strand, within H281DRAFT_03571 at 79.043 kb on - strand, within H281DRAFT_03571 at 79.160 kb on + strand, within H281DRAFT_03571 at 79.177 kb on - strand, within H281DRAFT_03571 at 79.180 kb on + strand, within H281DRAFT_03571 at 79.265 kb on + strand, within H281DRAFT_03571 at 79.444 kb on - strand, within H281DRAFT_03571 at 79.776 kb on + strand at 80.071 kb on + strand, within H281DRAFT_03572 at 80.072 kb on - strand, within H281DRAFT_03572 at 80.159 kb on + strand, within H281DRAFT_03572
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 77,779 - H281DRAFT_03570 0.33 -0.1 77,782 + H281DRAFT_03570 0.33 -1.3 77,782 + H281DRAFT_03570 0.33 +1.6 78,229 + H281DRAFT_03570 0.66 -0.6 78,257 - H281DRAFT_03570 0.68 -0.7 78,259 + H281DRAFT_03570 0.69 -1.2 78,539 + H281DRAFT_03570 0.90 -1.7 78,540 - H281DRAFT_03570 0.90 +0.1 78,540 - H281DRAFT_03570 0.90 +0.5 78,738 + +3.0 78,738 + +0.4 78,753 + -0.9 79,042 + H281DRAFT_03571 0.32 -0.2 79,042 + H281DRAFT_03571 0.32 +0.6 79,043 - H281DRAFT_03571 0.32 -0.3 79,160 + H281DRAFT_03571 0.44 +0.9 79,177 - H281DRAFT_03571 0.46 +0.3 79,180 + H281DRAFT_03571 0.46 +0.2 79,265 + H281DRAFT_03571 0.55 -0.2 79,444 - H281DRAFT_03571 0.73 -0.9 79,776 + +0.5 80,071 + H281DRAFT_03572 0.31 -0.7 80,072 - H281DRAFT_03572 0.31 +0.9 80,159 + H281DRAFT_03572 0.39 +0.7
Or see this region's nucleotide sequence