Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03562 and H281DRAFT_03563 are separated by 5 nucleotides H281DRAFT_03563 and H281DRAFT_03564 are separated by 69 nucleotides H281DRAFT_03564 and H281DRAFT_03565 are separated by 30 nucleotides
H281DRAFT_03562: H281DRAFT_03562 - AraC family transcriptional regulator, at 68,019 to 68,936
_03562
H281DRAFT_03563: H281DRAFT_03563 - FAD/FMN-containing dehydrogenase, at 68,942 to 71,962
_03563
H281DRAFT_03564: H281DRAFT_03564 - 2-keto-4-pentenoate hydratase, at 72,032 to 72,790
_03564
H281DRAFT_03565: H281DRAFT_03565 - Sugar phosphate permease, at 72,821 to 74,107
_03565
Position (kb) 68
69
70
71
72 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 67.955 kb on + strand at 67.955 kb on + strand at 67.956 kb on - strand at 67.982 kb on - strand at 67.985 kb on + strand at 67.985 kb on + strand at 67.985 kb on + strand at 67.985 kb on + strand at 67.986 kb on - strand at 67.986 kb on - strand at 67.994 kb on - strand at 68.227 kb on - strand, within H281DRAFT_03562 at 68.303 kb on - strand, within H281DRAFT_03562 at 68.343 kb on - strand, within H281DRAFT_03562 at 68.362 kb on - strand, within H281DRAFT_03562 at 68.445 kb on + strand, within H281DRAFT_03562 at 68.445 kb on + strand, within H281DRAFT_03562 at 68.842 kb on + strand, within H281DRAFT_03562 at 68.843 kb on - strand, within H281DRAFT_03562 at 68.870 kb on + strand at 68.935 kb on - strand at 68.935 kb on - strand at 69.077 kb on + strand at 69.078 kb on - strand at 69.078 kb on - strand at 69.111 kb on + strand at 69.218 kb on - strand at 69.384 kb on + strand, within H281DRAFT_03563 at 69.662 kb on + strand, within H281DRAFT_03563 at 69.662 kb on + strand, within H281DRAFT_03563 at 69.663 kb on - strand, within H281DRAFT_03563 at 70.011 kb on - strand, within H281DRAFT_03563 at 70.040 kb on + strand, within H281DRAFT_03563 at 70.040 kb on + strand, within H281DRAFT_03563 at 70.041 kb on - strand, within H281DRAFT_03563 at 70.165 kb on + strand, within H281DRAFT_03563 at 70.165 kb on + strand, within H281DRAFT_03563 at 70.166 kb on - strand, within H281DRAFT_03563 at 70.492 kb on - strand, within H281DRAFT_03563 at 70.503 kb on + strand, within H281DRAFT_03563 at 70.503 kb on + strand, within H281DRAFT_03563 at 70.515 kb on - strand, within H281DRAFT_03563 at 70.618 kb on - strand, within H281DRAFT_03563 at 70.672 kb on - strand, within H281DRAFT_03563 at 71.443 kb on - strand at 71.869 kb on + strand at 71.869 kb on + strand at 71.870 kb on - strand at 71.963 kb on - strand at 72.036 kb on + strand at 72.118 kb on - strand, within H281DRAFT_03564 at 72.300 kb on + strand, within H281DRAFT_03564 at 72.454 kb on + strand, within H281DRAFT_03564 at 72.454 kb on + strand, within H281DRAFT_03564 at 72.455 kb on - strand, within H281DRAFT_03564 at 72.456 kb on + strand, within H281DRAFT_03564 at 72.456 kb on + strand, within H281DRAFT_03564 at 72.456 kb on + strand, within H281DRAFT_03564 at 72.457 kb on - strand, within H281DRAFT_03564 at 72.812 kb on - strand at 72.812 kb on - strand at 72.823 kb on - strand at 72.823 kb on - strand at 72.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 67,955 + -0.4 67,955 + -3.6 67,956 - -0.1 67,982 - -0.2 67,985 + -0.4 67,985 + +0.9 67,985 + +0.3 67,985 + +0.1 67,986 - +0.6 67,986 - +0.2 67,994 - -0.5 68,227 - H281DRAFT_03562 0.23 +0.0 68,303 - H281DRAFT_03562 0.31 -0.1 68,343 - H281DRAFT_03562 0.35 +0.4 68,362 - H281DRAFT_03562 0.37 +0.4 68,445 + H281DRAFT_03562 0.46 -1.9 68,445 + H281DRAFT_03562 0.46 +1.0 68,842 + H281DRAFT_03562 0.90 +0.2 68,843 - H281DRAFT_03562 0.90 +0.0 68,870 + -1.1 68,935 - +0.2 68,935 - +0.5 69,077 + -0.7 69,078 - +0.4 69,078 - +0.3 69,111 + +0.5 69,218 - -0.1 69,384 + H281DRAFT_03563 0.15 -0.1 69,662 + H281DRAFT_03563 0.24 -0.8 69,662 + H281DRAFT_03563 0.24 -1.0 69,663 - H281DRAFT_03563 0.24 +1.0 70,011 - H281DRAFT_03563 0.35 +0.2 70,040 + H281DRAFT_03563 0.36 -3.9 70,040 + H281DRAFT_03563 0.36 +0.1 70,041 - H281DRAFT_03563 0.36 +0.5 70,165 + H281DRAFT_03563 0.40 -0.1 70,165 + H281DRAFT_03563 0.40 -0.2 70,166 - H281DRAFT_03563 0.41 +0.4 70,492 - H281DRAFT_03563 0.51 -0.6 70,503 + H281DRAFT_03563 0.52 +0.5 70,503 + H281DRAFT_03563 0.52 -0.2 70,515 - H281DRAFT_03563 0.52 +0.1 70,618 - H281DRAFT_03563 0.55 +0.2 70,672 - H281DRAFT_03563 0.57 -0.1 71,443 - +3.8 71,869 + -0.1 71,869 + -0.1 71,870 - +0.9 71,963 - +0.7 72,036 + -0.6 72,118 - H281DRAFT_03564 0.11 +1.0 72,300 + H281DRAFT_03564 0.35 -0.1 72,454 + H281DRAFT_03564 0.56 +0.6 72,454 + H281DRAFT_03564 0.56 -2.1 72,455 - H281DRAFT_03564 0.56 +0.1 72,456 + H281DRAFT_03564 0.56 -0.3 72,456 + H281DRAFT_03564 0.56 +0.7 72,456 + H281DRAFT_03564 0.56 -0.0 72,457 - H281DRAFT_03564 0.56 +1.0 72,812 - +0.3 72,812 - -1.6 72,823 - +1.0 72,823 - +0.0 72,932 - -1.6
Or see this region's nucleotide sequence