Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03510

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03509 and H281DRAFT_03510 are separated by 33 nucleotidesH281DRAFT_03510 and H281DRAFT_03511 are separated by 254 nucleotides H281DRAFT_03509: H281DRAFT_03509 - transcriptional regulator, GntR family, at 2,548 to 4,095 _03509 H281DRAFT_03510: H281DRAFT_03510 - Uncharacterized protein involved in outer membrane biogenesis, at 4,129 to 7,905 _03510 H281DRAFT_03511: H281DRAFT_03511 - Uncharacterized conserved protein, at 8,160 to 9,581 _03511 Position (kb) 4 5 6 7 8Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3.137 kb on - strand, within H281DRAFT_03509at 3.271 kb on + strand, within H281DRAFT_03509at 3.272 kb on - strand, within H281DRAFT_03509at 3.272 kb on - strand, within H281DRAFT_03509at 3.574 kb on + strand, within H281DRAFT_03509at 3.574 kb on + strand, within H281DRAFT_03509at 3.574 kb on + strand, within H281DRAFT_03509at 3.575 kb on - strand, within H281DRAFT_03509at 3.623 kb on - strandat 3.771 kb on - strand, within H281DRAFT_03509at 3.771 kb on - strand, within H281DRAFT_03509at 3.771 kb on - strand, within H281DRAFT_03509at 3.771 kb on - strand, within H281DRAFT_03509at 3.771 kb on - strand, within H281DRAFT_03509at 3.771 kb on - strand, within H281DRAFT_03509at 3.771 kb on - strand, within H281DRAFT_03509at 3.772 kb on + strand, within H281DRAFT_03509at 3.772 kb on + strand, within H281DRAFT_03509at 3.772 kb on + strand, within H281DRAFT_03509at 3.773 kb on - strand, within H281DRAFT_03509at 3.773 kb on - strand, within H281DRAFT_03509at 3.773 kb on - strand, within H281DRAFT_03509at 3.773 kb on - strand, within H281DRAFT_03509at 3.806 kb on + strand, within H281DRAFT_03509at 3.904 kb on - strand, within H281DRAFT_03509at 3.955 kb on + strandat 3.956 kb on - strandat 4.130 kb on + strandat 4.130 kb on + strandat 4.131 kb on - strandat 4.131 kb on - strandat 4.242 kb on - strandat 4.242 kb on - strandat 4.396 kb on - strandat 4.396 kb on - strandat 4.421 kb on + strandat 4.422 kb on - strandat 4.478 kb on - strandat 4.518 kb on - strand, within H281DRAFT_03510at 4.673 kb on + strand, within H281DRAFT_03510at 4.673 kb on + strand, within H281DRAFT_03510at 4.976 kb on + strand, within H281DRAFT_03510at 5.025 kb on - strandat 5.037 kb on - strand, within H281DRAFT_03510at 5.049 kb on + strand, within H281DRAFT_03510at 5.240 kb on + strand, within H281DRAFT_03510at 5.241 kb on - strand, within H281DRAFT_03510at 5.241 kb on - strand, within H281DRAFT_03510at 5.268 kb on - strand, within H281DRAFT_03510at 5.272 kb on + strand, within H281DRAFT_03510at 5.273 kb on - strand, within H281DRAFT_03510at 5.564 kb on + strand, within H281DRAFT_03510at 5.564 kb on + strand, within H281DRAFT_03510at 5.564 kb on + strand, within H281DRAFT_03510at 5.565 kb on - strand, within H281DRAFT_03510at 5.820 kb on - strand, within H281DRAFT_03510at 6.086 kb on + strand, within H281DRAFT_03510at 6.473 kb on + strand, within H281DRAFT_03510at 6.474 kb on - strand, within H281DRAFT_03510at 6.853 kb on + strand, within H281DRAFT_03510at 7.184 kb on + strand, within H281DRAFT_03510at 7.326 kb on + strand, within H281DRAFT_03510at 7.385 kb on - strand, within H281DRAFT_03510at 7.685 kb on - strandat 7.685 kb on - strandat 7.712 kb on + strandat 7.713 kb on - strandat 7.719 kb on + strandat 7.737 kb on + strandat 7.737 kb on + strandat 7.738 kb on - strandat 7.831 kb on + strandat 7.831 kb on + strandat 7.832 kb on - strandat 7.854 kb on + strandat 7.855 kb on - strandat 7.927 kb on - strandat 8.003 kb on + strandat 8.006 kb on - strandat 8.006 kb on - strandat 8.029 kb on - strandat 8.030 kb on + strandat 8.030 kb on + strandat 8.030 kb on + strandat 8.031 kb on - strandat 8.031 kb on - strandat 8.031 kb on - strandat 8.031 kb on - strandat 8.036 kb on + strandat 8.048 kb on - strandat 8.066 kb on + strandat 8.089 kb on + strandat 8.161 kb on + strandat 8.162 kb on - strandat 8.398 kb on + strand, within H281DRAFT_03511at 8.578 kb on + strand, within H281DRAFT_03511at 8.590 kb on + strand, within H281DRAFT_03511at 8.591 kb on - strand, within H281DRAFT_03511at 8.591 kb on - strand, within H281DRAFT_03511at 8.591 kb on - strand, within H281DRAFT_03511

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
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3,137 - H281DRAFT_03509 0.38 -0.1
3,271 + H281DRAFT_03509 0.47 +0.8
3,272 - H281DRAFT_03509 0.47 +1.1
3,272 - H281DRAFT_03509 0.47 -2.7
3,574 + H281DRAFT_03509 0.66 -0.1
3,574 + H281DRAFT_03509 0.66 +0.1
3,574 + H281DRAFT_03509 0.66 +1.2
3,575 - H281DRAFT_03509 0.66 -0.8
3,623 - +1.6
3,771 - H281DRAFT_03509 0.79 +0.1
3,771 - H281DRAFT_03509 0.79 -0.1
3,771 - H281DRAFT_03509 0.79 -0.4
3,771 - H281DRAFT_03509 0.79 +1.2
3,771 - H281DRAFT_03509 0.79 -0.1
3,771 - H281DRAFT_03509 0.79 +0.8
3,771 - H281DRAFT_03509 0.79 -0.6
3,772 + H281DRAFT_03509 0.79 -1.8
3,772 + H281DRAFT_03509 0.79 -3.1
3,772 + H281DRAFT_03509 0.79 +0.5
3,773 - H281DRAFT_03509 0.79 -2.1
3,773 - H281DRAFT_03509 0.79 +0.2
3,773 - H281DRAFT_03509 0.79 -0.1
3,773 - H281DRAFT_03509 0.79 -0.3
3,806 + H281DRAFT_03509 0.81 +0.1
3,904 - H281DRAFT_03509 0.88 -0.7
3,955 + +0.2
3,956 - -0.7
4,130 + +0.4
4,130 + +0.1
4,131 - -0.8
4,131 - -0.8
4,242 - -0.2
4,242 - -1.2
4,396 - +0.2
4,396 - +0.1
4,421 + -0.2
4,422 - -2.4
4,478 - -0.6
4,518 - H281DRAFT_03510 0.10 -0.7
4,673 + H281DRAFT_03510 0.14 +1.2
4,673 + H281DRAFT_03510 0.14 +0.7
4,976 + H281DRAFT_03510 0.22 -0.0
5,025 - +2.0
5,037 - H281DRAFT_03510 0.24 -1.6
5,049 + H281DRAFT_03510 0.24 +0.6
5,240 + H281DRAFT_03510 0.29 +0.1
5,241 - H281DRAFT_03510 0.29 +1.3
5,241 - H281DRAFT_03510 0.29 -0.3
5,268 - H281DRAFT_03510 0.30 -1.0
5,272 + H281DRAFT_03510 0.30 +0.1
5,273 - H281DRAFT_03510 0.30 +1.6
5,564 + H281DRAFT_03510 0.38 +4.2
5,564 + H281DRAFT_03510 0.38 -0.9
5,564 + H281DRAFT_03510 0.38 -2.6
5,565 - H281DRAFT_03510 0.38 -0.2
5,820 - H281DRAFT_03510 0.45 -0.7
6,086 + H281DRAFT_03510 0.52 -2.3
6,473 + H281DRAFT_03510 0.62 -1.1
6,474 - H281DRAFT_03510 0.62 +0.7
6,853 + H281DRAFT_03510 0.72 -2.1
7,184 + H281DRAFT_03510 0.81 +0.9
7,326 + H281DRAFT_03510 0.85 -1.2
7,385 - H281DRAFT_03510 0.86 +0.3
7,685 - -0.4
7,685 - +0.0
7,712 + -1.2
7,713 - -1.7
7,719 + +1.9
7,737 + -0.1
7,737 + +0.0
7,738 - +0.7
7,831 + -4.2
7,831 + +0.1
7,832 - +0.0
7,854 + +0.9
7,855 - +3.8
7,927 - +0.2
8,003 + -0.3
8,006 - -0.2
8,006 - +0.0
8,029 - -0.6
8,030 + +0.0
8,030 + -0.2
8,030 + +0.8
8,031 - +0.3
8,031 - +0.1
8,031 - +0.6
8,031 - -0.6
8,036 + -1.3
8,048 - -1.6
8,066 + +0.2
8,089 + -0.0
8,161 + +0.8
8,162 - -0.1
8,398 + H281DRAFT_03511 0.17 +0.6
8,578 + H281DRAFT_03511 0.29 +1.3
8,590 + H281DRAFT_03511 0.30 -0.6
8,591 - H281DRAFT_03511 0.30 +0.7
8,591 - H281DRAFT_03511 0.30 +0.4
8,591 - H281DRAFT_03511 0.30 +1.4

Or see this region's nucleotide sequence