Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03483 and H281DRAFT_03484 are separated by 307 nucleotides H281DRAFT_03484 and H281DRAFT_03485 are separated by 2 nucleotides
H281DRAFT_03483: H281DRAFT_03483 - Major Facilitator Superfamily protein, at 567,297 to 568,649
_03483
H281DRAFT_03484: H281DRAFT_03484 - osmoprotectant transport system permease protein, at 568,957 to 569,682
_03484
H281DRAFT_03485: H281DRAFT_03485 - osmoprotectant transport system ATP-binding protein, at 569,685 to 570,803
_03485
Position (kb) 568
569
570 Strain fitness (log2 ratio) -1
0
1 at 568.054 kb on - strand, within H281DRAFT_03483 at 568.054 kb on - strand, within H281DRAFT_03483 at 568.162 kb on - strand, within H281DRAFT_03483 at 568.310 kb on - strand at 568.396 kb on - strand, within H281DRAFT_03483 at 568.900 kb on - strand at 569.021 kb on + strand at 569.119 kb on + strand, within H281DRAFT_03484 at 569.120 kb on - strand, within H281DRAFT_03484 at 569.270 kb on - strand at 569.441 kb on - strand, within H281DRAFT_03484 at 569.442 kb on + strand, within H281DRAFT_03484 at 569.630 kb on + strand at 570.257 kb on + strand, within H281DRAFT_03485 at 570.258 kb on - strand, within H281DRAFT_03485 at 570.653 kb on + strand, within H281DRAFT_03485
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 568,054 - H281DRAFT_03483 0.56 -1.2 568,054 - H281DRAFT_03483 0.56 +0.2 568,162 - H281DRAFT_03483 0.64 -1.4 568,310 - -0.2 568,396 - H281DRAFT_03483 0.81 +0.2 568,900 - -1.1 569,021 + -1.1 569,119 + H281DRAFT_03484 0.22 +1.3 569,120 - H281DRAFT_03484 0.22 -0.1 569,270 - +1.6 569,441 - H281DRAFT_03484 0.67 +0.1 569,442 + H281DRAFT_03484 0.67 +0.9 569,630 + +1.4 570,257 + H281DRAFT_03485 0.51 -0.3 570,258 - H281DRAFT_03485 0.51 -0.2 570,653 + H281DRAFT_03485 0.87 +1.0
Or see this region's nucleotide sequence