Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03241 and H281DRAFT_03242 are separated by 118 nucleotides H281DRAFT_03242 and H281DRAFT_03243 are separated by 81 nucleotides H281DRAFT_03243 and H281DRAFT_03244 are separated by 77 nucleotides H281DRAFT_03244 and H281DRAFT_03245 are separated by 41 nucleotides
H281DRAFT_03241: H281DRAFT_03241 - Short-chain dehydrogenase, at 296,487 to 297,485
_03241
H281DRAFT_03242: H281DRAFT_03242 - Predicted dithiol-disulfide isomerase, DsbA family, at 297,604 to 298,245
_03242
H281DRAFT_03243: H281DRAFT_03243 - hypothetical protein, at 298,327 to 300,243
_03243
H281DRAFT_03244: H281DRAFT_03244 - hypothetical protein, at 300,321 to 300,653
_03244
H281DRAFT_03245: H281DRAFT_03245 - Uncharacterized iron-regulated membrane protein, at 300,695 to 302,221
_03245
Position (kb) 298
299
300
301 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 297.552 kb on - strand at 297.595 kb on - strand at 297.711 kb on - strand, within H281DRAFT_03242 at 297.784 kb on + strand, within H281DRAFT_03242 at 297.785 kb on - strand, within H281DRAFT_03242 at 297.785 kb on - strand, within H281DRAFT_03242 at 297.785 kb on - strand, within H281DRAFT_03242 at 297.889 kb on + strand, within H281DRAFT_03242 at 297.895 kb on + strand, within H281DRAFT_03242 at 298.402 kb on + strand at 298.403 kb on - strand at 298.451 kb on + strand at 298.452 kb on - strand at 298.498 kb on + strand at 298.642 kb on + strand, within H281DRAFT_03243 at 298.678 kb on + strand, within H281DRAFT_03243 at 298.710 kb on + strand, within H281DRAFT_03243 at 298.736 kb on + strand, within H281DRAFT_03243 at 298.737 kb on - strand, within H281DRAFT_03243 at 298.786 kb on + strand, within H281DRAFT_03243 at 298.802 kb on - strand, within H281DRAFT_03243 at 298.825 kb on - strand, within H281DRAFT_03243 at 298.855 kb on - strand, within H281DRAFT_03243 at 299.218 kb on + strand, within H281DRAFT_03243 at 299.219 kb on - strand, within H281DRAFT_03243 at 299.219 kb on - strand, within H281DRAFT_03243 at 299.398 kb on + strand, within H281DRAFT_03243 at 299.398 kb on + strand, within H281DRAFT_03243 at 299.453 kb on - strand, within H281DRAFT_03243 at 299.565 kb on + strand, within H281DRAFT_03243 at 299.612 kb on + strand, within H281DRAFT_03243 at 299.660 kb on + strand, within H281DRAFT_03243 at 299.661 kb on - strand, within H281DRAFT_03243 at 299.683 kb on - strand, within H281DRAFT_03243 at 299.728 kb on + strand, within H281DRAFT_03243 at 299.728 kb on + strand, within H281DRAFT_03243 at 299.833 kb on + strand, within H281DRAFT_03243 at 299.834 kb on - strand, within H281DRAFT_03243 at 300.092 kb on + strand at 300.181 kb on + strand at 300.182 kb on - strand at 300.254 kb on + strand at 300.278 kb on - strand at 300.335 kb on + strand at 300.340 kb on + strand at 300.469 kb on - strand, within H281DRAFT_03244 at 300.474 kb on + strand, within H281DRAFT_03244 at 300.474 kb on + strand, within H281DRAFT_03244 at 300.475 kb on - strand, within H281DRAFT_03244 at 300.545 kb on + strand, within H281DRAFT_03244 at 300.638 kb on + strand at 300.661 kb on - strand at 300.696 kb on + strand at 300.777 kb on - strand at 301.054 kb on - strand, within H281DRAFT_03245 at 301.095 kb on + strand, within H281DRAFT_03245 at 301.095 kb on + strand, within H281DRAFT_03245 at 301.095 kb on + strand, within H281DRAFT_03245 at 301.143 kb on + strand, within H281DRAFT_03245 at 301.144 kb on - strand, within H281DRAFT_03245
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 297,552 - +0.9 297,595 - -0.0 297,711 - H281DRAFT_03242 0.17 -0.2 297,784 + H281DRAFT_03242 0.28 -0.2 297,785 - H281DRAFT_03242 0.28 -0.2 297,785 - H281DRAFT_03242 0.28 -0.3 297,785 - H281DRAFT_03242 0.28 -0.7 297,889 + H281DRAFT_03242 0.44 -1.1 297,895 + H281DRAFT_03242 0.45 +0.2 298,402 + +0.6 298,403 - +0.3 298,451 + +0.5 298,452 - +0.6 298,498 + +0.0 298,642 + H281DRAFT_03243 0.16 -0.2 298,678 + H281DRAFT_03243 0.18 -0.3 298,710 + H281DRAFT_03243 0.20 -2.1 298,736 + H281DRAFT_03243 0.21 -0.7 298,737 - H281DRAFT_03243 0.21 +0.6 298,786 + H281DRAFT_03243 0.24 +0.5 298,802 - H281DRAFT_03243 0.25 -1.5 298,825 - H281DRAFT_03243 0.26 +1.3 298,855 - H281DRAFT_03243 0.28 +0.9 299,218 + H281DRAFT_03243 0.46 -1.8 299,219 - H281DRAFT_03243 0.47 -0.6 299,219 - H281DRAFT_03243 0.47 -1.1 299,398 + H281DRAFT_03243 0.56 +0.1 299,398 + H281DRAFT_03243 0.56 +0.7 299,453 - H281DRAFT_03243 0.59 -0.8 299,565 + H281DRAFT_03243 0.65 +1.2 299,612 + H281DRAFT_03243 0.67 +2.4 299,660 + H281DRAFT_03243 0.70 -0.4 299,661 - H281DRAFT_03243 0.70 -1.2 299,683 - H281DRAFT_03243 0.71 +0.2 299,728 + H281DRAFT_03243 0.73 +0.5 299,728 + H281DRAFT_03243 0.73 +0.8 299,833 + H281DRAFT_03243 0.79 +0.0 299,834 - H281DRAFT_03243 0.79 +0.5 300,092 + +0.5 300,181 + -0.3 300,182 - -0.8 300,254 + +0.1 300,278 - +1.0 300,335 + -0.5 300,340 + +0.5 300,469 - H281DRAFT_03244 0.44 -1.5 300,474 + H281DRAFT_03244 0.46 -0.4 300,474 + H281DRAFT_03244 0.46 +1.5 300,475 - H281DRAFT_03244 0.46 -3.4 300,545 + H281DRAFT_03244 0.67 -0.9 300,638 + -1.2 300,661 - -0.6 300,696 + -0.4 300,777 - +0.7 301,054 - H281DRAFT_03245 0.24 +0.3 301,095 + H281DRAFT_03245 0.26 -0.6 301,095 + H281DRAFT_03245 0.26 +0.1 301,095 + H281DRAFT_03245 0.26 +0.4 301,143 + H281DRAFT_03245 0.29 +0.8 301,144 - H281DRAFT_03245 0.29 -1.2
Or see this region's nucleotide sequence