Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03013 and H281DRAFT_03014 are separated by 364 nucleotides H281DRAFT_03014 and H281DRAFT_03015 are separated by 33 nucleotides
H281DRAFT_03013: H281DRAFT_03013 - transcriptional regulator, LysR family, at 40,086 to 41,033
_03013
H281DRAFT_03014: H281DRAFT_03014 - MFS transporter, OFA family, oxalate/formate antiporter, at 41,398 to 42,744
_03014
H281DRAFT_03015: H281DRAFT_03015 - transcriptional regulator, LysR family, at 42,778 to 43,818
_03015
Position (kb) 41
42
43 Strain fitness (log2 ratio) -1
0
1
2
3 at 40.443 kb on + strand, within H281DRAFT_03013 at 40.444 kb on - strand, within H281DRAFT_03013 at 40.509 kb on - strand, within H281DRAFT_03013 at 40.528 kb on + strand, within H281DRAFT_03013 at 40.711 kb on + strand, within H281DRAFT_03013 at 40.712 kb on - strand, within H281DRAFT_03013 at 40.820 kb on - strand, within H281DRAFT_03013 at 40.852 kb on + strand, within H281DRAFT_03013 at 40.853 kb on - strand, within H281DRAFT_03013 at 40.995 kb on + strand at 41.045 kb on - strand at 41.225 kb on + strand at 41.326 kb on + strand at 41.346 kb on + strand at 41.347 kb on - strand at 41.374 kb on + strand at 41.378 kb on + strand at 41.504 kb on - strand at 41.504 kb on - strand at 41.728 kb on + strand, within H281DRAFT_03014 at 41.729 kb on - strand, within H281DRAFT_03014 at 42.086 kb on - strand, within H281DRAFT_03014 at 42.234 kb on + strand, within H281DRAFT_03014 at 42.234 kb on + strand, within H281DRAFT_03014 at 42.315 kb on + strand, within H281DRAFT_03014 at 42.352 kb on + strand, within H281DRAFT_03014 at 42.463 kb on + strand, within H281DRAFT_03014 at 42.491 kb on - strand, within H281DRAFT_03014 at 42.589 kb on - strand, within H281DRAFT_03014 at 43.665 kb on - strand, within H281DRAFT_03015 at 43.674 kb on + strand, within H281DRAFT_03015
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 40,443 + H281DRAFT_03013 0.38 +0.5 40,444 - H281DRAFT_03013 0.38 -0.5 40,509 - H281DRAFT_03013 0.45 +3.6 40,528 + H281DRAFT_03013 0.47 -0.3 40,711 + H281DRAFT_03013 0.66 -1.5 40,712 - H281DRAFT_03013 0.66 -0.8 40,820 - H281DRAFT_03013 0.77 +0.5 40,852 + H281DRAFT_03013 0.81 +1.0 40,853 - H281DRAFT_03013 0.81 +0.6 40,995 + -1.6 41,045 - -0.9 41,225 + -0.1 41,326 + +0.5 41,346 + +0.2 41,347 - -0.8 41,374 + +0.3 41,378 + -0.1 41,504 - -1.0 41,504 - +0.3 41,728 + H281DRAFT_03014 0.24 +0.3 41,729 - H281DRAFT_03014 0.25 +0.4 42,086 - H281DRAFT_03014 0.51 -0.5 42,234 + H281DRAFT_03014 0.62 +0.1 42,234 + H281DRAFT_03014 0.62 -0.2 42,315 + H281DRAFT_03014 0.68 -0.1 42,352 + H281DRAFT_03014 0.71 +0.4 42,463 + H281DRAFT_03014 0.79 -0.2 42,491 - H281DRAFT_03014 0.81 +0.2 42,589 - H281DRAFT_03014 0.88 +0.4 43,665 - H281DRAFT_03015 0.85 +0.6 43,674 + H281DRAFT_03015 0.86 +0.2
Or see this region's nucleotide sequence