Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02897 and H281DRAFT_02898 are separated by 157 nucleotides
H281DRAFT_02897: H281DRAFT_02897 - nicotinamide phosphoribosyltransferase, at 499,618 to 501,066
_02897
H281DRAFT_02898: H281DRAFT_02898 - hypothetical protein, at 501,224 to 501,523
_02898
Position (kb) 501
502 Strain fitness (log2 ratio) -2
-1
0
1
2 at 500.244 kb on - strand, within H281DRAFT_02897 at 500.394 kb on - strand, within H281DRAFT_02897 at 500.645 kb on + strand, within H281DRAFT_02897 at 500.645 kb on + strand, within H281DRAFT_02897 at 500.645 kb on + strand, within H281DRAFT_02897 at 500.940 kb on - strand at 500.978 kb on + strand at 500.978 kb on + strand at 501.106 kb on + strand at 501.106 kb on + strand at 501.107 kb on - strand at 501.241 kb on - strand at 501.303 kb on + strand, within H281DRAFT_02898 at 501.460 kb on + strand, within H281DRAFT_02898 at 501.588 kb on + strand at 501.752 kb on - strand at 501.752 kb on - strand at 501.752 kb on - strand at 502.105 kb on + strand at 502.106 kb on - strand at 502.106 kb on - strand at 502.180 kb on + strand at 502.191 kb on + strand at 502.192 kb on - strand at 502.192 kb on - strand at 502.193 kb on + strand at 502.211 kb on - strand at 502.211 kb on - strand at 502.211 kb on - strand at 502.263 kb on + strand at 502.264 kb on - strand at 502.313 kb on - strand at 502.321 kb on + strand at 502.383 kb on + strand at 502.384 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 500,244 - H281DRAFT_02897 0.43 +1.0 500,394 - H281DRAFT_02897 0.54 -0.4 500,645 + H281DRAFT_02897 0.71 -0.2 500,645 + H281DRAFT_02897 0.71 -0.0 500,645 + H281DRAFT_02897 0.71 -0.6 500,940 - -1.3 500,978 + -2.1 500,978 + +0.1 501,106 + -0.1 501,106 + -2.4 501,107 - -0.7 501,241 - -0.4 501,303 + H281DRAFT_02898 0.26 -1.4 501,460 + H281DRAFT_02898 0.79 +0.1 501,588 + +2.7 501,752 - +1.0 501,752 - +0.0 501,752 - -1.7 502,105 + +0.3 502,106 - -0.0 502,106 - -0.6 502,180 + -0.0 502,191 + +0.6 502,192 - +1.0 502,192 - +0.2 502,193 + +0.3 502,211 - +1.0 502,211 - +0.6 502,211 - -2.6 502,263 + +1.2 502,264 - +1.2 502,313 - -0.0 502,321 + -0.1 502,383 + -2.6 502,384 - +0.9
Or see this region's nucleotide sequence