Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02812 and H281DRAFT_02813 are separated by 196 nucleotides H281DRAFT_02813 and H281DRAFT_02814 are separated by 198 nucleotides
H281DRAFT_02812: H281DRAFT_02812 - glycogen operon protein, at 401,210 to 403,426
_02812
H281DRAFT_02813: H281DRAFT_02813 - Uncharacterized protein conserved in bacteria, at 403,623 to 404,024
_02813
H281DRAFT_02814: H281DRAFT_02814 - xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC 1.17.1.4), at 404,223 to 406,472
_02814
Position (kb) 403
404
405 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 402.726 kb on + strand, within H281DRAFT_02812 at 402.753 kb on + strand, within H281DRAFT_02812 at 402.753 kb on + strand, within H281DRAFT_02812 at 402.820 kb on - strand, within H281DRAFT_02812 at 403.060 kb on + strand, within H281DRAFT_02812 at 403.192 kb on - strand, within H281DRAFT_02812 at 403.243 kb on + strand at 403.244 kb on - strand at 403.245 kb on + strand at 403.246 kb on - strand at 403.427 kb on - strand at 403.472 kb on + strand at 403.479 kb on + strand at 403.480 kb on - strand at 403.480 kb on - strand at 403.601 kb on + strand at 403.601 kb on + strand at 403.601 kb on + strand at 403.602 kb on - strand at 403.602 kb on - strand at 403.605 kb on + strand at 403.605 kb on + strand at 403.964 kb on - strand, within H281DRAFT_02813 at 404.013 kb on + strand at 404.162 kb on + strand at 404.334 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 402,726 + H281DRAFT_02812 0.68 -0.2 402,753 + H281DRAFT_02812 0.70 -0.3 402,753 + H281DRAFT_02812 0.70 -1.0 402,820 - H281DRAFT_02812 0.73 +3.2 403,060 + H281DRAFT_02812 0.83 -1.2 403,192 - H281DRAFT_02812 0.89 -1.0 403,243 + +0.1 403,244 - +0.6 403,245 + +0.7 403,246 - +0.2 403,427 - -0.4 403,472 + -0.0 403,479 + +1.0 403,480 - +0.3 403,480 - +0.8 403,601 + -0.5 403,601 + -0.2 403,601 + +1.1 403,602 - -2.1 403,602 - +0.7 403,605 + +0.7 403,605 + +0.2 403,964 - H281DRAFT_02813 0.85 -1.4 404,013 + +0.2 404,162 + +1.2 404,334 + -0.1
Or see this region's nucleotide sequence