Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02805 and H281DRAFT_02806 are separated by 87 nucleotides H281DRAFT_02806 and H281DRAFT_02807 are separated by 116 nucleotides
H281DRAFT_02805: H281DRAFT_02805 - fructose-bisphosphate aldolase, at 392,865 to 393,884
_02805
H281DRAFT_02806: H281DRAFT_02806 - hypothetical protein, at 393,972 to 394,265
_02806
H281DRAFT_02807: H281DRAFT_02807 - Signal transduction histidine kinase, at 394,382 to 396,568
_02807
Position (kb) 393
394
395 Strain fitness (log2 ratio) -1
0
1 at 393.288 kb on + strand, within H281DRAFT_02805 at 393.289 kb on - strand, within H281DRAFT_02805 at 393.326 kb on - strand, within H281DRAFT_02805 at 393.512 kb on + strand, within H281DRAFT_02805 at 393.512 kb on + strand, within H281DRAFT_02805 at 393.512 kb on + strand, within H281DRAFT_02805 at 393.512 kb on + strand, within H281DRAFT_02805 at 393.513 kb on - strand, within H281DRAFT_02805 at 393.513 kb on - strand, within H281DRAFT_02805 at 393.588 kb on + strand, within H281DRAFT_02805 at 393.588 kb on + strand, within H281DRAFT_02805 at 393.735 kb on + strand, within H281DRAFT_02805 at 393.736 kb on - strand, within H281DRAFT_02805 at 393.763 kb on + strand, within H281DRAFT_02805 at 393.763 kb on + strand, within H281DRAFT_02805 at 393.882 kb on + strand at 394.101 kb on - strand, within H281DRAFT_02806 at 394.241 kb on + strand at 394.439 kb on + strand at 394.440 kb on - strand at 394.440 kb on - strand at 394.809 kb on + strand, within H281DRAFT_02807 at 394.810 kb on - strand, within H281DRAFT_02807 at 395.011 kb on - strand, within H281DRAFT_02807 at 395.011 kb on - strand, within H281DRAFT_02807 at 395.024 kb on + strand, within H281DRAFT_02807
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 393,288 + H281DRAFT_02805 0.41 +0.4 393,289 - H281DRAFT_02805 0.42 -0.1 393,326 - H281DRAFT_02805 0.45 +0.4 393,512 + H281DRAFT_02805 0.63 -0.5 393,512 + H281DRAFT_02805 0.63 +0.2 393,512 + H281DRAFT_02805 0.63 -0.4 393,512 + H281DRAFT_02805 0.63 +0.7 393,513 - H281DRAFT_02805 0.64 -1.0 393,513 - H281DRAFT_02805 0.64 -0.6 393,588 + H281DRAFT_02805 0.71 -0.9 393,588 + H281DRAFT_02805 0.71 -0.1 393,735 + H281DRAFT_02805 0.85 +0.3 393,736 - H281DRAFT_02805 0.85 +0.7 393,763 + H281DRAFT_02805 0.88 +0.1 393,763 + H281DRAFT_02805 0.88 +0.2 393,882 + -0.4 394,101 - H281DRAFT_02806 0.44 -0.2 394,241 + -0.6 394,439 + -1.4 394,440 - -0.7 394,440 - +0.8 394,809 + H281DRAFT_02807 0.20 +0.6 394,810 - H281DRAFT_02807 0.20 +1.2 395,011 - H281DRAFT_02807 0.29 -1.0 395,011 - H281DRAFT_02807 0.29 +0.3 395,024 + H281DRAFT_02807 0.29 -0.0
Or see this region's nucleotide sequence