Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02617 and H281DRAFT_02618 overlap by 4 nucleotides H281DRAFT_02618 and H281DRAFT_02619 are separated by 105 nucleotides H281DRAFT_02619 and H281DRAFT_02620 are separated by 23 nucleotides
H281DRAFT_02617: H281DRAFT_02617 - transcriptional regulator, RpiR family, at 193,116 to 193,976
_02617
H281DRAFT_02618: H281DRAFT_02618 - transcriptional regulator, LysR family, at 193,973 to 194,860
_02618
H281DRAFT_02619: H281DRAFT_02619 - N-acyl-D-amino-acid deacylase, at 194,966 to 196,402
_02619
H281DRAFT_02620: H281DRAFT_02620 - Sugar phosphate permease, at 196,426 to 197,742
_02620
Position (kb) 194
195
196
197 Strain fitness (log2 ratio) -1
0
1 at 193.994 kb on + strand at 193.994 kb on + strand at 193.995 kb on - strand at 193.995 kb on - strand at 194.199 kb on + strand, within H281DRAFT_02618 at 194.200 kb on - strand, within H281DRAFT_02618 at 194.505 kb on + strand, within H281DRAFT_02618 at 194.582 kb on - strand, within H281DRAFT_02618 at 194.715 kb on - strand, within H281DRAFT_02618 at 195.335 kb on + strand, within H281DRAFT_02619 at 195.981 kb on - strand, within H281DRAFT_02619 at 196.342 kb on + strand at 196.343 kb on - strand at 196.655 kb on - strand, within H281DRAFT_02620 at 197.215 kb on - strand, within H281DRAFT_02620 at 197.314 kb on + strand, within H281DRAFT_02620
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 193,994 + +0.8 193,994 + -0.0 193,995 - +0.5 193,995 - +0.4 194,199 + H281DRAFT_02618 0.25 +0.1 194,200 - H281DRAFT_02618 0.26 +0.2 194,505 + H281DRAFT_02618 0.60 -0.1 194,582 - H281DRAFT_02618 0.69 -0.3 194,715 - H281DRAFT_02618 0.84 +0.8 195,335 + H281DRAFT_02619 0.26 -0.1 195,981 - H281DRAFT_02619 0.71 +1.6 196,342 + +0.5 196,343 - +0.5 196,655 - H281DRAFT_02620 0.17 +0.7 197,215 - H281DRAFT_02620 0.60 -0.2 197,314 + H281DRAFT_02620 0.67 +0.8
Or see this region's nucleotide sequence